G43942


Basic Information

Item Value
gene id G43942
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5442465 ~ 5442923 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49882
TATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTTAATTTTGATGATTAGAGCGTACAGCTCATGAAAGTCCAAAATCCAGTATCTCAAAATATTAGAATATTTCCTAAGATCAATCAAAAAATGGATTTGCTAAACAGAAAAGTTCAAGTTCTTTAAAGTATGTTCATTTGTGCACTCAATACTTGGTCGGCAGCACATATTACAGCAAATGACTTGCTCCTAGCACAAATTACTGCATCAGTGAAGTGTGGCCTGGAAGTGATCAGCCTGTGGCACTGCTGAGGCACTATTGAGCCTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATCTTTCTCTTGAAAATATCCCATAGATTCAGGTCAGGCATGTTGGCTGGCCAATAAAGCACAGTAATATCATGGTCAGCAAACCACTTGGAAGTGTTTTTTNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49882 True 459 lncRNA 0.36 1 5442465 5442923

Neighbor

gene id symbol gene type direction distance location
CI01000006_05380873_05439031 NA coding upstream 2948 5380319 ~ 5439517 (+)
CI01000006_05276965_05313266 NA coding upstream 128235 5276756 ~ 5314230 (+)
CI01000006_05196006_05199842 NA coding upstream 241886 5195332 ~ 5200579 (+)
CI01000006_05169144_05174432 NA coding upstream 267162 5168117 ~ 5175303 (+)
CI01000006_04989318_04992332 SC5D coding upstream 449624 4989318 ~ 4992841 (+)
CI01000006_05469329_05478118 NA coding downstream 26094 5469017 ~ 5478629 (+)
CI01000006_05617900_05693346 NCAM1, NCAM1A coding downstream 174977 5617900 ~ 5693346 (+)
CI01000006_05719079_05723838 NA coding downstream 276156 5719079 ~ 5724165 (+)
CI01000006_05729706_05734532 NA coding downstream 286345 5729268 ~ 5734668 (+)
CI01000006_05739275_05746584 NA coding downstream 295885 5738808 ~ 5747186 (+)
G43934 NA non-coding upstream 14147 5428100 ~ 5428318 (+)
G43933 NA non-coding upstream 14381 5427850 ~ 5428084 (+)
G42224 NA non-coding upstream 44324 5397778 ~ 5398141 (+)
G42223 NA non-coding upstream 44760 5397430 ~ 5397705 (+)
G42220 NA non-coding upstream 47177 5394919 ~ 5395288 (+)
G43903 NA non-coding downstream 328958 5771881 ~ 5773949 (+)
G43898 NA non-coding downstream 346498 5789421 ~ 5790914 (+)
G43887 NA non-coding downstream 349994 5792917 ~ 5804161 (+)
G43970 NA non-coding downstream 629474 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 667243 6110166 ~ 6110406 (+)
G41996 NA other upstream 318316 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 1706487 3734554 ~ 3736035 (+)
G41591 NA other upstream 2603044 2836167 ~ 2839421 (+)
G41424 NA other upstream 2781895 2645662 ~ 2660570 (+)
G41170 NA other upstream 3746644 1692065 ~ 1695821 (+)
G43896 NA other downstream 327166 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 665561 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 679112 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1723866 7166778 ~ 7168925 (+)
G44872 NA other downstream 1913429 7356352 ~ 7387884 (+)

Expression


Co-expression Network