Gene
RNA
| Item | Value |
|---|---|
| gene id | G43896 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 5770089 ~ 5771775 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: helicase with zinc finger domain 2 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU49835 | True | 1687 | TUCP | 0.43 | 1 | 5770089 | 5771775 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_05739275_05746584 | NA | coding | upstream | 22903 | 5738808 ~ 5747186 (+) |
| CI01000006_05729706_05734532 | NA | coding | upstream | 35421 | 5729268 ~ 5734668 (+) |
| CI01000006_05719079_05723838 | NA | coding | upstream | 45924 | 5719079 ~ 5724165 (+) |
| CI01000006_05617900_05693346 | NCAM1, NCAM1A | coding | upstream | 76743 | 5617900 ~ 5693346 (+) |
| CI01000006_05469329_05478118 | NA | coding | upstream | 291460 | 5469017 ~ 5478629 (+) |
| CI01000006_05821114_05830402 | ZBTB16, ZBTB16A | coding | downstream | 48663 | 5820438 ~ 5830561 (+) |
| CI01000006_05870762_05888691 | USP28 | coding | downstream | 98987 | 5870762 ~ 5889135 (+) |
| CI01000006_05893735_05901666 | ZW10 | coding | downstream | 121756 | 5893531 ~ 5902022 (+) |
| CI01000006_05903309_05926132 | DLAT | coding | downstream | 131534 | 5903309 ~ 5926132 (+) |
| CI01000006_05933352_05969576 | NA | coding | downstream | 161399 | 5933174 ~ 5970118 (+) |
| G43942 | NA | non-coding | upstream | 327166 | 5442465 ~ 5442923 (+) |
| G43934 | NA | non-coding | upstream | 341771 | 5428100 ~ 5428318 (+) |
| G43933 | NA | non-coding | upstream | 342005 | 5427850 ~ 5428084 (+) |
| G42224 | NA | non-coding | upstream | 371948 | 5397778 ~ 5398141 (+) |
| G42223 | NA | non-coding | upstream | 372384 | 5397430 ~ 5397705 (+) |
| G43903 | NA | non-coding | downstream | 106 | 5771881 ~ 5773949 (+) |
| G43898 | NA | non-coding | downstream | 17646 | 5789421 ~ 5790914 (+) |
| G43887 | NA | non-coding | downstream | 21142 | 5792917 ~ 5804161 (+) |
| G43970 | NA | non-coding | downstream | 300622 | 6072397 ~ 6072706 (+) |
| G43988 | NA | non-coding | downstream | 338391 | 6110166 ~ 6110406 (+) |
| G41996 | NA | other | upstream | 645940 | 5117206 ~ 5124149 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | upstream | 2034111 | 3734554 ~ 3736035 (+) |
| G41591 | NA | other | upstream | 2930668 | 2836167 ~ 2839421 (+) |
| G41424 | NA | other | upstream | 3109519 | 2645662 ~ 2660570 (+) |
| G41170 | NA | other | upstream | 4074268 | 1692065 ~ 1695821 (+) |
| CI01000006_06104927_06109730 | NA | other | downstream | 336709 | 6104927 ~ 6109820 (+) |
| CI01000006_06122278_06122736 | NA | other | downstream | 350260 | 6122035 ~ 6122751 (+) |
| CI01000006_07167131_07168925 | NA | other | downstream | 1395014 | 7166778 ~ 7168925 (+) |
| G44872 | NA | other | downstream | 1584577 | 7356352 ~ 7387884 (+) |
| G45178 | NA | other | downstream | 1850216 | 7607604 ~ 7683671 (+) |
