Gene
RNA
| Item | Value |
|---|---|
| gene id | G43898 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 5789421 ~ 5790914 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU49837 | True | 1494 | lncRNA | 0.33 | 1 | 5789421 | 5790914 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_05739275_05746584 | NA | coding | upstream | 42235 | 5738808 ~ 5747186 (+) |
| CI01000006_05729706_05734532 | NA | coding | upstream | 54753 | 5729268 ~ 5734668 (+) |
| CI01000006_05719079_05723838 | NA | coding | upstream | 65256 | 5719079 ~ 5724165 (+) |
| CI01000006_05617900_05693346 | NCAM1, NCAM1A | coding | upstream | 96075 | 5617900 ~ 5693346 (+) |
| CI01000006_05469329_05478118 | NA | coding | upstream | 310792 | 5469017 ~ 5478629 (+) |
| CI01000006_05821114_05830402 | ZBTB16, ZBTB16A | coding | downstream | 29524 | 5820438 ~ 5830561 (+) |
| CI01000006_05870762_05888691 | USP28 | coding | downstream | 79848 | 5870762 ~ 5889135 (+) |
| CI01000006_05893735_05901666 | ZW10 | coding | downstream | 102617 | 5893531 ~ 5902022 (+) |
| CI01000006_05903309_05926132 | DLAT | coding | downstream | 112395 | 5903309 ~ 5926132 (+) |
| CI01000006_05933352_05969576 | NA | coding | downstream | 142260 | 5933174 ~ 5970118 (+) |
| G43903 | NA | non-coding | upstream | 15472 | 5771881 ~ 5773949 (+) |
| G43942 | NA | non-coding | upstream | 346498 | 5442465 ~ 5442923 (+) |
| G43934 | NA | non-coding | upstream | 361103 | 5428100 ~ 5428318 (+) |
| G43933 | NA | non-coding | upstream | 361337 | 5427850 ~ 5428084 (+) |
| G42224 | NA | non-coding | upstream | 391280 | 5397778 ~ 5398141 (+) |
| G43887 | NA | non-coding | downstream | 2003 | 5792917 ~ 5804161 (+) |
| G43970 | NA | non-coding | downstream | 281483 | 6072397 ~ 6072706 (+) |
| G43988 | NA | non-coding | downstream | 319252 | 6110166 ~ 6110406 (+) |
| G43990 | NA | non-coding | downstream | 329444 | 6120358 ~ 6120735 (+) |
| G43908 | NA | non-coding | downstream | 360959 | 6151873 ~ 6154727 (+) |
| G43896 | NA | other | upstream | 17646 | 5770089 ~ 5771775 (+) |
| G41996 | NA | other | upstream | 665272 | 5117206 ~ 5124149 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | upstream | 2053443 | 3734554 ~ 3736035 (+) |
| G41591 | NA | other | upstream | 2950000 | 2836167 ~ 2839421 (+) |
| G41424 | NA | other | upstream | 3128851 | 2645662 ~ 2660570 (+) |
| CI01000006_06104927_06109730 | NA | other | downstream | 317570 | 6104927 ~ 6109820 (+) |
| CI01000006_06122278_06122736 | NA | other | downstream | 331121 | 6122035 ~ 6122751 (+) |
| CI01000006_07167131_07168925 | NA | other | downstream | 1375875 | 7166778 ~ 7168925 (+) |
| G44872 | NA | other | downstream | 1565438 | 7356352 ~ 7387884 (+) |
| G45178 | NA | other | downstream | 1831077 | 7607604 ~ 7683671 (+) |
