G43990


Basic Information

Item Value
gene id G43990
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6120358 ~ 6120735 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49936
GGGGAGTCGAAAATCAGAGAAACAACCAGTGTTCAGGAGCATGTTCATCATGTTCATGTTCACATATATACATGTGGGCGAGCAAAAATTAAGGCCTCGGACCTCCACATGTGTGGATACATGCATACTTGTGCATCCGTGCACATTCACACACGTTCATGTACACAAACAAACTATTTTGAGTATTACAGGCTTTCTTTTGCACAGAGATGAACTTTATCTTCAAATCAGTGAGGCTCAGATTAATGAGGCCTACGATTAATCAGTTTCAAAAATGAATACAAAACCTGTCCTAATTCAAAGGAAACAAGTTGAATATCCAATATTTGGTAATAAAATAGTGTAACAAGTGATTTATAAGTTATTTTTCTGCAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49936 True 378 lncRNA 0.37 1 6120358 6120735

Neighbor

gene id symbol gene type direction distance location
CI01000006_06111210_06113067 NA coding upstream 7235 6111107 ~ 6113123 (+)
CI01000006_06104927_06109730 NA coding upstream 10538 6104927 ~ 6109820 (+)
CI01000006_06100199_06103495 FBXO40.1 coding upstream 16835 6100199 ~ 6103523 (+)
CI01000006_06095035_06097240 FBXO40.2 coding upstream 23118 6095035 ~ 6097240 (+)
CI01000006_06049283_06057849 TRPC6, TRPC6A, TRPC6B coding upstream 61482 6049283 ~ 6058876 (+)
CI01000006_06122278_06122736 NA coding downstream 1344 6122035 ~ 6122751 (+)
CI01000006_06136379_06136891 NA coding downstream 15081 6135816 ~ 6137257 (+)
CI01000006_06142449_06142925 GIG2I coding downstream 21564 6142299 ~ 6143068 (+)
CI01000006_06146799_06148260 NA coding downstream 25994 6146729 ~ 6148405 (+)
CI01000006_06171151_06179449 PVRL1A coding downstream 50416 6171151 ~ 6181375 (+)
G43988 NA non-coding upstream 9952 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 47652 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 316197 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 329444 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 346409 5771881 ~ 5773949 (+)
G43908 NA non-coding downstream 31138 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 73434 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 152203 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 154270 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 164913 6285648 ~ 6285875 (+)
G43896 NA other upstream 348583 5770089 ~ 5771775 (+)
G41996 NA other upstream 996209 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2384380 3734554 ~ 3736035 (+)
G41591 NA other upstream 3280937 2836167 ~ 2839421 (+)
CI01000006_07167131_07168925 NA other downstream 1046054 7166778 ~ 7168925 (+)
G44872 NA other downstream 1235617 7356352 ~ 7387884 (+)
G45178 NA other downstream 1501256 7607604 ~ 7683671 (+)
G45265 NA other downstream 1763132 7883867 ~ 7920355 (+)

Expression


Co-expression Network