G43908


Basic Information

Item Value
gene id G43908
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6151873 ~ 6154727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49847
ACTCCCATCTGTTTATTTAGCAGCAATCAGATTCATAATGCACAGCACCTCGGAGGACGATATAGTAACAAGAATCTTCGACACCGTTTAAAAAAAACAGACCTACGAACAACATTTGCCACATATGCTATGTATTAGCGACTGCTATTTTACATAAAATTACGACAAAAAAGCAATTTACCAACCTTGCTTTGCGTACATTAAGAGAATTCTACTTCCACTTCCTTACATTTGTCTTTGCCAACAGCGTTATAAGTTGTGCTGACGCACAAACACATGCTTTCACTTTCATTTCATGAACAGACTGCACACTACACATATCAGTCATATTATATCATACCTGTTATATTTAACAAAGATTTAAAATGTGAGGTAACGATTTGTATGGAATGCATGCATAAAACGACCCTACTACCGTCTCTCAAAAATACTTAAATACATATAGGCCAACTGAAATATCAGTCTAGTAAACGTGGGCGCGCGGTCAGAGTCAGATGCTGTGCGTAGCCAATCAGAAGGTTCGTGAAGATGCCCTATTGGATAGAAGAAGTGTTTATAGGTCCGGTCATCTGGCCATGAACTCACTCTACCTGCAAACTTCGCGTTGAGCTCATCTCCTTTTTTTTTTTTTGCATGACTGGATTTGTCAAGATTCAAAATGCCAAGATGTCATCTGACCACCCCCCACTGGATGTGTGCAACGACATGATTGCACATTTCCCAGTAAAGATGAAGAGAGGACGCTGCAGACACTGCAATAATGGATACACAAACACACTGTGTAGCAAGTGCAATGTTCGCCTGTGCTTCTCAGATGAAAAGAACTGTCTTAGGGACTATCACTGTAAAACACAGACTTCATTCAAACCACATTGAAAGTGATAGAAGAAAAAGTTTTATAAATACAAATTTTTTCAATATTTTTATTAATAAATGCTTATTCATAAAAAATATGATTGCTGTGTGATTATTACTCATGATGTATACTGTTATGGGGCTAAGTAAGCAATCAACCCTGCAAATGAATGCTTAAATGCTCTGTATATCTGTTCAGACAAAGTGAGTACAAATACAGAAATTCTGCTCCTAACTAGGCCCAACGTTGCAATATTACAACAGTTCCCTAAAAACATACTAAAATGTAAAAAATTTGAAAAATCTTTAATTTCTACATCAGAGGCCTCCTAAAACAATATCTGAGAGGTCAAAAAAAATGTTGCTCTTTTTTTTCTATATTTGGGTTTTACAGGGTTAATATACAAAAACCCTAAAAATACTTTAACTTATTGCACACAGGACATGTCTTCACTTGTGCTTTGGCTAGACACATAAAAGGCATAAAGTAAATAAATACCCTCATAAAGGCAGCAACCAGTACTTTACAGTAAATGCAGAGCATGTAGATTGAAAATACTCAAATTTGCTGCAAAATCTACAGAAATACTTTATTTAGAGTCTAGAAATGCATTTGCACATCCTGTAGCTGACCAGCACAGAAACCTGTTTTTAAAAGGCTTCCGATAGATGTATGATGCACAGAGGAATCAGGAGACTGAGCCAAGGATAACCCAGCAGAAACACACTGATGGCAGAGCAGGGCTGGATGCTATCTAGAAGGCAAAGACAAGTTCAGGTTTAGGCAGAGAAAATATTCATTCTAGTTTTATGTTGTAGAAATTTATCTCAGCTTTTGTACCTAATTCAACAAATAGAGTCTTCTGGATCTTGGTTACTTTACAAATGAATGTTGTATTCTCAGTGATGGTGAAGCTCATAATGGTCAGCCTGAATCCGTATGGTTCGAGCTCTGTCACAAATGTGTTGTGCCTGAACTTGGGTTCAGGCATGATTCCAGAGATGTTTGTGCTTATGATGGTCTCCTTTTGGCTTTTGGACATGGAGAACTCATAGTCTGTGTGGTAGTTGGGTTTGGGCTCCAGAAGGCAGTCCACTCTGAGGTCTTTATCTTCCTCTTGGCATACTGTAATTACACTCTCCTCATCCTCACACAACACTGGGCTCATCAGAACTGGAAATGAGAAATCACATTATTTAGATATTTACCATATATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49847 True 2074 lncRNA 0.38 2 6151873 6154727

Neighbor

gene id symbol gene type direction distance location
CI01000006_06146799_06148260 NA coding upstream 3468 6146729 ~ 6148405 (+)
CI01000006_06142449_06142925 GIG2I coding upstream 8805 6142299 ~ 6143068 (+)
CI01000006_06136379_06136891 NA coding upstream 14616 6135816 ~ 6137257 (+)
CI01000006_06122278_06122736 NA coding upstream 29122 6122035 ~ 6122751 (+)
CI01000006_06111210_06113067 NA coding upstream 38750 6111107 ~ 6113123 (+)
CI01000006_06171151_06179449 PVRL1A coding downstream 16424 6171151 ~ 6181375 (+)
CI01000006_06192438_06193928 NA coding downstream 37711 6192438 ~ 6194004 (+)
CI01000006_06201072_06204390 CFAP53 coding downstream 46345 6201072 ~ 6204695 (+)
CI01000006_06225846_06258303 MYO5B coding downstream 71119 6225846 ~ 6258515 (+)
CI01000006_06267132_06269409 NA coding downstream 112405 6267132 ~ 6270057 (+)
G43990 NA non-coding upstream 31138 6120358 ~ 6120735 (+)
G43988 NA non-coding upstream 41467 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 79167 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 347712 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 360959 5789421 ~ 5790914 (+)
G43904 NA non-coding downstream 39442 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 118211 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 120278 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 130921 6285648 ~ 6285875 (+)
G44035 NA non-coding downstream 232988 6387715 ~ 6390438 (+)
CI01000006_06104927_06109730 NA other upstream 42285 6104927 ~ 6109820 (+)
G43896 NA other upstream 380098 5770089 ~ 5771775 (+)
G41996 NA other upstream 1027724 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2415895 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 1012062 7166778 ~ 7168925 (+)
G44872 NA other downstream 1201625 7356352 ~ 7387884 (+)
G45178 NA other downstream 1467264 7607604 ~ 7683671 (+)
G45265 NA other downstream 1729140 7883867 ~ 7920355 (+)
G45336 NA other downstream 1864615 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location