G43904


Basic Information

Item Value
gene id G43904
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6194169 ~ 6199969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU49843
AAGATAATACAAAATACATTTTCAGCAATCCTACACCAGTACACAGATTTTGAAAGGCTTATGTGTTTTTGCATTCATCAATGAACTCAACTGACTTTAACTGCAATCACATGGTTTGAGGTAAACCAATCATTTAGGTAAATGACTATTTAATATTTTTGAATGAATTGTCTTTTTAAGCAAAATGCACTAATTTCTGAACTCAGTGTTTAATAAAATGAAGGCTGAACATGACTGGAATGAATTAGATTCTTTCTTTAAATTTTTCTTCCCCTTTCTAATTTAAATAAAGCTGTCAAAGCCAAACAGCATTATTAATGACAGATTTATTTTAAATTTTGTTTTCATGCTCAATTTTACTTGCATCTTTTTAAGGGGCAGAAAACAAACCCTCTTCTTCACAGTAACGGAACACAAATGAACAGATGAACTAAACTTGACAGTTTCTCCTTACTCCTTCACTCACTGATCAGAGAAACAGACATATACAACTACAAATATACAAATCCAAACATGTTCCACAATCATAAAACAACTTAGTGTGAGTGTGTGTACGCATGTGTGAATGCAGACTTTGCATGTTAAAATGTAGACACACATCAATTCAAAGGCAAAACCTTTTGGTTACTAATAATGTCAGACAGCTTCAGTTTCAGTTTCAGGAATATTCTCTTGAATTCCAAACCGTCCCCCTTTGACAGTCGGAAATCTACTAAAATGCGTTCCTCCATTTCCAGGAAGTGCACTATGAAGATCAGCTTATTATTGCGGCGATCCATTGTGGACACTGTCGCCTGATTGGTGCAGCTCTGTTTCCATGTGTGACCCATAGCAATGCAGGCATCACGGAGAGCAATGCAAGACGGCTCTGCCTTCACCGTGGTAAAGAACCTGGTCATCCTTCTCACCAACCGCTGCCATGGGTTCTGGCTGGCACCCGGTGTGCCAAGCAGTTGGGTGCCCAGCAACATGTGGTCAGGACAGGTAGGCTGCGAAAAGCTGACACTGATATCTGTATGCACTGTAACCTCCTTCTGTTCCCACAATCCCTGCGGCTCAGGCTGAGAGCTGGAGATCTGTGCTCTGTCATCACTGTTTTTTCGTCTCAGTTGTGCGAGTTCTGAGTCAGCCCGATGCATCTTGGTTACTGGTGTGTCACTCTGTCGTTTTACTGCTGATTTGAAACTTCTGCTAAACCAACGATGTTTCTTAATTTCAGGAATGGTGAACCTGTCCTCTGGATTATGCAGTAATATCTTGGATAGCAGACTCAGGGGCACAGCATCAATTTTCTTCCATGGTGTGAGGTAGATCTTCTTCTCCAGCCAATCTAAATATTCCTGACAGTTTTCGCTCGGCTGGTCCCATGGTAACTCTCCGGCTAACATTGCAGTGAGCACAATACCACAAGCCCAAGTGTCCGCAGGTTGAGCGTGGAACGCCGAGCGTGACATCAGCTCGGGGGCAACATAGGGTAGAGTGCCACACAAACGAGTCAGCGCCCGCTCTCGACCACGGTGACGGAACATGGTAGCCAGTCCAAAATCAGAGATCTTCAGATTATCTTTATCATCAAGAAGAATATTCTCAGGTTTTATGTCACGGTGTGTTATCCCAATGCTGTGAAGATATTCCACACCAGCTATTAACTGCTGAAAAAACCTGTGCGCCTCCTTTTCTGGCATCCCAACATCTGGTTCGATTCGGTCAAAAAGCTCTCCTCCACTACAGTACTCCAAGAAGATGTACTGTGTCGTCCCCTCACTCCTGTGCCCAAAGAAACGTACGATGTTGGGGTGTGAGAGTATCTTGCATATGCAAACCTCCTTCTTCACATTCTCTATACAATCCTTGGCCTTTGCCATGTCCACAACTTTGACCGCCACAGCTTCTTCTGTCTTCTTGTTGACAAGCAGTCGCACCTCTCCGTACGCCCCCTCTCCAAGGGTTTGTACCACATCCCAGTCTTTAACAAAAGGCACAGACATGATCTGATCTTACGAGTCGCGTATACCAGTGTAGAAAATGTCCCATGTGAAGCAGGTTGTTTATCAGCTCTTTTGGTATATTTACACGCTAAAAATGTCTACACTGAAATGTCCATATTAATAATACAAGAGCATCCGTCCAAACTTTGGCGCGTTCCGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49843 True 2151 lncRNA 0.41 13 6194169 6199969

Neighbor

gene id symbol gene type direction distance location
CI01000006_06192438_06193928 NA coding upstream 165 6192438 ~ 6194004 (+)
CI01000006_06171151_06179449 PVRL1A coding upstream 12794 6171151 ~ 6181375 (+)
CI01000006_06146799_06148260 NA coding upstream 45764 6146729 ~ 6148405 (+)
CI01000006_06142449_06142925 GIG2I coding upstream 51101 6142299 ~ 6143068 (+)
CI01000006_06136379_06136891 NA coding upstream 56912 6135816 ~ 6137257 (+)
CI01000006_06201072_06204390 CFAP53 coding downstream 1103 6201072 ~ 6204695 (+)
CI01000006_06225846_06258303 MYO5B coding downstream 25877 6225846 ~ 6258515 (+)
CI01000006_06267132_06269409 NA coding downstream 67163 6267132 ~ 6270057 (+)
CI01000006_06289413_06296642 NA coding downstream 89330 6289299 ~ 6297106 (+)
CI01000006_06304760_06308641 SKP2 coding downstream 104210 6304179 ~ 6309263 (+)
G43908 NA non-coding upstream 39442 6151873 ~ 6154727 (+)
G43990 NA non-coding upstream 73434 6120358 ~ 6120735 (+)
G43988 NA non-coding upstream 83763 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 121463 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 390008 5792917 ~ 5804161 (+)
G44009 NA non-coding downstream 72969 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 75036 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 85679 6285648 ~ 6285875 (+)
G44035 NA non-coding downstream 187746 6387715 ~ 6390438 (+)
G44053 NA non-coding downstream 221961 6421930 ~ 6424506 (+)
CI01000006_06122278_06122736 NA other upstream 65494 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 84581 6104927 ~ 6109820 (+)
G43896 NA other upstream 422394 5770089 ~ 5771775 (+)
G41996 NA other upstream 1070020 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2458191 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 966820 7166778 ~ 7168925 (+)
G44872 NA other downstream 1156383 7356352 ~ 7387884 (+)
G45178 NA other downstream 1422022 7607604 ~ 7683671 (+)
G45265 NA other downstream 1683898 7883867 ~ 7920355 (+)
G45336 NA other downstream 1819373 8019342 ~ 8021951 (+)

Expression


Co-expression Network