Gene
RNA
| Item | Value |
|---|---|
| gene id | G44780 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 6992868 ~ 6995377 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU50903 | False | 535 | lncRNA | 0.50 | 4 | 6992868 | 6995377 |
| TU50904 | True | 345 | lncRNA | 0.44 | 2 | 6992868 | 6994863 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_06987083_06990215 | NA | coding | upstream | 2510 | 6987083 ~ 6990358 (+) |
| CI01000006_06955035_06961818 | PPM1NB, PPM1N | coding | upstream | 30663 | 6955035 ~ 6962205 (+) |
| CI01000006_06898410_06913888 | NECTIN3, PVRL3B | coding | upstream | 78922 | 6898410 ~ 6913946 (+) |
| CI01000006_06853100_06858970 | OR133-7 | coding | upstream | 133435 | 6852831 ~ 6859433 (+) |
| CI01000006_06847369_06848340 | OR133-1 | coding | upstream | 144157 | 6846954 ~ 6848711 (+) |
| CI01000006_07066344_07070484 | FTSJ1 | coding | downstream | 70967 | 7066344 ~ 7071255 (+) |
| CI01000006_07072315_07073358 | NA | coding | downstream | 76291 | 7071668 ~ 7073411 (+) |
| CI01000006_07078406_07080719 | NA | coding | downstream | 81575 | 7076952 ~ 7080930 (+) |
| CI01000006_07121418_07160572 | ANK1 | coding | downstream | 125792 | 7121169 ~ 7160825 (+) |
| CI01000006_07167131_07168925 | NA | coding | downstream | 171401 | 7166778 ~ 7168925 (+) |
| G44747 | NA | non-coding | upstream | 15984 | 6976398 ~ 6976884 (+) |
| G44755 | NA | non-coding | upstream | 22052 | 6970504 ~ 6970816 (+) |
| G44745 | NA | non-coding | upstream | 29344 | 6945655 ~ 6963524 (+) |
| G44210 | NA | non-coding | upstream | 143711 | 6848942 ~ 6849157 (+) |
| G44817 | NA | non-coding | downstream | 68144 | 7063521 ~ 7063784 (+) |
| G44818 | NA | non-coding | downstream | 68450 | 7063827 ~ 7064167 (+) |
| G44794 | NA | non-coding | downstream | 167103 | 7162480 ~ 7164707 (+) |
| G44821 | NA | non-coding | downstream | 177840 | 7173217 ~ 7173447 (+) |
| G44793 | NA | non-coding | downstream | 227545 | 7222922 ~ 7312257 (+) |
| CI01000006_06122278_06122736 | NA | other | upstream | 864193 | 6122035 ~ 6122751 (+) |
| CI01000006_06104927_06109730 | NA | other | upstream | 883280 | 6104927 ~ 6109820 (+) |
| G43896 | NA | other | upstream | 1221093 | 5770089 ~ 5771775 (+) |
| G41996 | NA | other | upstream | 1868719 | 5117206 ~ 5124149 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | upstream | 3256890 | 3734554 ~ 3736035 (+) |
| G44872 | NA | other | downstream | 360975 | 7356352 ~ 7387884 (+) |
| G45178 | NA | other | downstream | 626614 | 7607604 ~ 7683671 (+) |
| G45265 | NA | other | downstream | 888490 | 7883867 ~ 7920355 (+) |
| G45336 | NA | other | downstream | 1023965 | 8019342 ~ 8021951 (+) |
