G39347


Basic Information

Item Value
gene id G39347
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 295169 ~ 295569 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53022
ttatcaaaccccagaacctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagcgccatccatctgttattaaattccagaatctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagcaccatctatctgttatcaaaccccagaacctactaatctaaccagcacagctccatccatctgttatcaaaccccagaatctactaatctaaccagcacagctccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcgccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcgccat

Function

NR:

description
PREDICTED: amphoterin-induced protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53022 True 401 lncRNA 0.44 1 295169 295569

Neighbor

gene id symbol gene type direction distance location
LOC103034506 kcnh1b,LOC108411957,LOC108270513,LOC107689936,LOC107753489,LOC106564801,LOC105026838 coding upstream 56173 159102 ~ 238996 (+)
LOC103033866 mark1,LOC108271264,LOC108411950 coding upstream 215139 32499 ~ 80030 (+)
ptk7 ptk7,LOC108411955,LOC107698238 coding upstream 271298 506 ~ 23871 (+)
wwtr1 wwtr1 coding downstream 1698 297267 ~ 380545 (+)
LOC103032290 LOC108439433,LOC108271171 coding downstream 121799 417368 ~ 447315 (+)
LOC103032607 LOC108439442 coding downstream 165911 461480 ~ 471204 (+)
cp cp,LOC100533122 coding downstream 183703 479272 ~ 533627 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding downstream 322588 618157 ~ 637895 (+)
G39346 NA non-coding upstream 92 294699 ~ 295077 (+)
LOC111192488 NA non-coding upstream 39728 248773 ~ 255441 (+)
G39331 NA non-coding upstream 66912 220144 ~ 228257 (+)
G39327 NA non-coding upstream 112329 174825 ~ 182840 (+)
G39322 NA non-coding upstream 140881 153892 ~ 154288 (+)
G39352 NA non-coding downstream 73574 369143 ~ 369781 (+)
G39349 NA non-coding downstream 115566 411135 ~ 412188 (+)
G39372 NA non-coding downstream 241536 537105 ~ 538332 (+)
G39452 NA non-coding downstream 243929 539498 ~ 539828 (+)
G39457 NA non-coding downstream 251512 547081 ~ 547352 (+)
commd2 commd2 other upstream 4147 281585 ~ 291022 (+)
plekho2 NA other downstream 627188 922757 ~ 963284 (+)
pdcd7 NA other downstream 743004 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 911218 1206787 ~ 1209096 (+)
G39626 NA other downstream 924237 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 970288 1265857 ~ 1268385 (+)

Expression


Co-expression Network