G39459


Basic Information

Item Value
gene id G39459
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 547609 ~ 547813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53159
cttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcactaactctcctaacacctctaactaactaccttctactaccagatcaggagcatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53159 True 205 lncRNA 0.40 1 547609 547813

Neighbor

gene id symbol gene type direction distance location
cp cp,LOC100533122 coding upstream 13982 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 76405 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 100294 417368 ~ 447315 (+)
wwtr1 wwtr1 coding upstream 167064 297267 ~ 380545 (+)
LOC103034506 kcnh1b,LOC108411957,LOC108270513,LOC107689936,LOC107753489,LOC106564801,LOC105026838 coding upstream 308613 159102 ~ 238996 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding downstream 70344 618157 ~ 637895 (+)
immp1l immp1l,LOC107594745 coding downstream 124068 671881 ~ 681622 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 427124 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 463826 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 500431 1048244 ~ 1071616 (+)
G39457 NA non-coding upstream 257 547081 ~ 547352 (+)
G39452 NA non-coding upstream 7781 539498 ~ 539828 (+)
G39372 NA non-coding upstream 9277 537105 ~ 538332 (+)
G39349 NA non-coding upstream 135421 411135 ~ 412188 (+)
G39352 NA non-coding upstream 177828 369143 ~ 369781 (+)
LOC111192489 NA non-coding downstream 54043 601856 ~ 603927 (+)
G39504 NA non-coding downstream 165020 712833 ~ 715218 (+)
G39506 NA non-coding downstream 197755 745568 ~ 750620 (+)
G39511 snrpa1,LOC106587741 non-coding downstream 203009 750822 ~ 753837 (+)
G39512 NA non-coding downstream 219525 767338 ~ 767614 (+)
commd2 commd2 other upstream 256587 281585 ~ 291022 (+)
plekho2 NA other downstream 374944 922757 ~ 963284 (+)
pdcd7 NA other downstream 490760 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 658974 1206787 ~ 1209096 (+)
G39626 NA other downstream 671993 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 718044 1265857 ~ 1268385 (+)

Expression


Co-expression Network