G39506


Basic Information

Item Value
gene id G39506
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 745568 ~ 750620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53217
tccgccATGCTGGTACGGGTCTCTGCTCTCCCGGCTGCTCTCTGACCCCAGTGCCTGAGTGCCTCTCCCCTTTGGCCGGGGAAAAACTCGGACGTTTGCCCGCTTGGAGGATCCAGGAGGCGGCGGCGGAAAGGCTGGAGGTCGCTGCCCGGGGGGTCGAGGGTCCTGCCCCGCTGCTCTTTGGCCGGTGTCCTGCCCGGCACACAAAGGTTCTGGTGCTGTTTGGGTTCTGGTGGCAGTTCTGAAGGATGCCGGGTGCGTGTCCGGCTCCAGGCTGCTGGTAAGGTTTCTGCTGTTTGATTTGGATTAAGGATGGCCCACAGGATGCCGACACAGGGCAAAGTGACCATCGCTGTGGACGAGTACAGTTCCAACCCCACGCAGGCCTTCACCCACTACAACATCAACCAGAGCCGCTTCCAGCCCCCCCACGTCCACATGTGAGTAACCCCATAGCGGATCCTCTCATGCTGCAGGAGATTCACACCGCTGATACATTTTTGGACACATACGTT
>TU53218
tccgccATGCTGGTACGGGTCTCTGCTCTCCCGGCTGCTCTCTGACCCCAGTGCCTGAGTGCCTCTCCCCTTTGGCCGGGGAAAAACTCGGACGTTTGCCCGCTTGGAGGATCCAGGAGGCGGCGGCGGAAAGGCTGGAGGTCGCTGCCCGGGGGGTCGAGGGTCCTGCCCCGCTGCTCTTTGGCCGGTGTCCTGCCCGGCACACAAAGGTTCTGGTGCTGTTTGGGTTCTGGTGGCAGTTCTGAAGGATGCCGGGTGCGTGTCCGGCTCCAGGCTGCTGGTAAGGTTTCTGCTGTTTGATTTGGATTAAGGATGGCCCACAGGATGCCGACACAGGGCAAAGTGACCATCGCTGTGGACGAGTACAGTTCCAACCCCACGCAGGCCTTCACCCACTACAACATCAACCAGAGCCGCTTCCAGCCCCCCCACGTCCACATGgtgggtcccA

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53217 True 515 lncRNA 0.60 2 745568 749938
TU53218 False 451 lncRNA 0.63 3 745568 750620

Neighbor

gene id symbol gene type direction distance location
immp1l immp1l,LOC107594745 coding upstream 63946 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 107673 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 211941 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 274364 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 298253 417368 ~ 447315 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 224317 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 261019 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 297624 1048244 ~ 1071616 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 331931 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 372723 1123343 ~ 1153288 (+)
G39504 NA non-coding upstream 30350 712833 ~ 715218 (+)
LOC111192489 NA non-coding upstream 141641 601856 ~ 603927 (+)
G39459 NA non-coding upstream 197755 547609 ~ 547813 (+)
G39457 NA non-coding upstream 198216 547081 ~ 547352 (+)
G39452 NA non-coding upstream 205740 539498 ~ 539828 (+)
G39511 snrpa1,LOC106587741 non-coding downstream 202 750822 ~ 753837 (+)
G39512 NA non-coding downstream 16718 767338 ~ 767614 (+)
G39529 NA non-coding downstream 129065 879685 ~ 879896 (+)
G39539 NA non-coding downstream 214308 964928 ~ 967328 (+)
LOC111192491 NA non-coding downstream 402924 1153544 ~ 1159078 (+)
commd2 commd2 other upstream 454546 281585 ~ 291022 (+)
plekho2 NA other downstream 172137 922757 ~ 963284 (+)
pdcd7 NA other downstream 287953 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 456167 1206787 ~ 1209096 (+)
G39626 NA other downstream 469186 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 515237 1265857 ~ 1268385 (+)

Expression


Co-expression Network