G39511 (snrpa1,LOC106587741)


Basic Information

Item Value
gene id G39511
gene name snrpa1,LOC106587741
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 750822 ~ 753837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53223
ACTTCTTCTGACCCACTTCTCACTGATAAACAGGAGCCGCTGAaagtctctcttctctcaccaGATGCGGTTGTTGTTCATCAGCACGGTCTTCAGCCTCTTGAGCAGTGGAAACCCATCAAGCTTTCTGATCTCATTATCAGAGAAGTCAATGGTGTCAAACTGGTCCAGAGTGGCACCGAGATTCTCCAGCACTGGGATTTTGTAACCTCTCAGGTCCAGTTCTCGGTCCCGGACGGGGTTGGTGTACTGAGCCGCCTGTTCTATCAGCTCAGCCGAGAGCTTCACCATGCTGCTGCCGAACTGAAGCGGAGAGATGAGTAAAATAAACCGGTTTAATTcagaataaactcaaataaacaccaAACAAACACCCGGCCCGGAATCTCTGCTCATTTACCGCCAGCAGCACTGCGGACACAC

Function

symbol description
snrpa1 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP. Is expressed in female organism. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A').

NR:

description
PREDICTED: U2 small nuclear ribonucleoprotein A'-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53223 True 423 lncRNA 0.50 2 750822 753837

Neighbor

gene id symbol gene type direction distance location
immp1l immp1l,LOC107594745 coding upstream 69200 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 112927 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 217195 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 279618 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 303507 417368 ~ 447315 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 221100 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 257802 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 294407 1048244 ~ 1071616 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 328714 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 369506 1123343 ~ 1153288 (+)
G39506 NA non-coding upstream 202 745568 ~ 750620 (+)
G39504 NA non-coding upstream 35604 712833 ~ 715218 (+)
LOC111192489 NA non-coding upstream 146895 601856 ~ 603927 (+)
G39459 NA non-coding upstream 203009 547609 ~ 547813 (+)
G39457 NA non-coding upstream 203470 547081 ~ 547352 (+)
G39512 NA non-coding downstream 13501 767338 ~ 767614 (+)
G39529 NA non-coding downstream 125848 879685 ~ 879896 (+)
G39539 NA non-coding downstream 211091 964928 ~ 967328 (+)
LOC111192491 NA non-coding downstream 399707 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 431735 1185572 ~ 1186479 (+)
commd2 commd2 other upstream 459800 281585 ~ 291022 (+)
plekho2 NA other downstream 168920 922757 ~ 963284 (+)
pdcd7 NA other downstream 284736 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 452950 1206787 ~ 1209096 (+)
G39626 NA other downstream 465969 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 512020 1265857 ~ 1268385 (+)

Expression


Co-expression Network