G39512


Basic Information

Item Value
gene id G39512
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 767338 ~ 767614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53225
caatgaaaatgaagccaaaatcttcctccatgttggcgatcctgaaacccgagtctgcgcagtagagaccagaggagggagaaagactgtggagagcagcctactcatttaaataaccccgcccctgagggctgcctcgcggtcacagactgcagagccaAGCGGAGCaaagctgacggtctgttattggtcccgcccataagcagcccttttacaataaccacaccttttttgaatagagctgaataacgttttaaaaaacgaattctgtggggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53225 True 277 lncRNA 0.49 1 767338 767614

Neighbor

gene id symbol gene type direction distance location
immp1l immp1l,LOC107594745 coding upstream 85716 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 129443 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 233711 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 296134 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 320023 417368 ~ 447315 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 207323 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 244025 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 280630 1048244 ~ 1071616 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 314937 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 355729 1123343 ~ 1153288 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 13501 750822 ~ 753837 (+)
G39506 NA non-coding upstream 16718 745568 ~ 750620 (+)
G39504 NA non-coding upstream 52120 712833 ~ 715218 (+)
LOC111192489 NA non-coding upstream 163411 601856 ~ 603927 (+)
G39459 NA non-coding upstream 219525 547609 ~ 547813 (+)
G39529 NA non-coding downstream 112071 879685 ~ 879896 (+)
G39539 NA non-coding downstream 197314 964928 ~ 967328 (+)
LOC111192491 NA non-coding downstream 385930 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 417958 1185572 ~ 1186479 (+)
G39621 NA non-coding downstream 441668 1209282 ~ 1209733 (+)
commd2 commd2 other upstream 476316 281585 ~ 291022 (+)
plekho2 NA other downstream 155143 922757 ~ 963284 (+)
pdcd7 NA other downstream 270959 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 439173 1206787 ~ 1209096 (+)
G39626 NA other downstream 452192 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 498243 1265857 ~ 1268385 (+)

Expression


Co-expression Network