pdcd7


Basic Information

Item Value
gene id pdcd7
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1038573 ~ 1045347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53274
gtggatgtgtgtgtgcgtgtggatgtgtgtgtgcgtgtggatgtgtgtgtgcgtgtggatgtgtgtgtgcgtgtggatgtgtgtgtgcgtgtggaaGCACTCTCTACCCGTCCTGATCCAAATAAGGAGAGAATGGGATCAGTTTCTGGTTCCAGTAGATCATCCTGACGGCACGTCGATCCCTCCGTGCTGGGTCCTTCCAGACCCTCCAGCAGATGATGTCTGGGCCACTGCTCTTGAGAAGTGAATCTGACTTCCGAACCATTTCTGACTGctgaatcattttatatttgtagtttaCTGATAACATAAGAATAAGAGAATTTCTACAGCACCAGTGTTCACAGATGGTCCAGGAGCTCACTGACATCTAAGCTACAGTatatttttgtaacattttgaataaaaagGAGTGAAGAG
>XM_022670130.1
CCATAGAGCGGAAGTGACCAGCATTAGCGCTACATCCGGTTAGCGGGGAGCAGCGGTGAGAAACTGTTTAGCTGTTTAGTTAACTGGCCGGGTTACTGTTTATCTGTTACAGTAAAACACAGCGGCTGCATTCATTCAGGACTCGCAGGAAACATGAACAACCTCCCGCCGTACTCTGCGGAGCCGCCGGGAGCGGCAGAGGGCCGCGGGTACGGCAGCAGAGGCGGGTACGGTGTCGGAGCGCCGCCCGGCTCCGTCCCTCCACCCCCGACGCCGCCGTGGCCCGGACAGCACGGACAGCCCGGGCCGTACAGCCAGTGGCCGCCGTTCCAGCCCCAGCCGTTCTCTCACCCTCCACTTTTCGACCCCAGCAGGCCTCCTCCAGGCTTCTTCGGCGAGCAGCAGAACGCGCTGTGGCCTCCTCCGGCCAGCAGGGGGCAGCAAGCGCATGTAGGTACTGATAGGGGCAGCTTTGATCAAGGGGGCCCTTTTACAAATTTTGGACCACCACCAATCCCAACACCATGTCCACCAGTGCACCAGCCCAGGTTTCACCAACTCAACCCACCAGCCAGTCCAAGCTTCACTCCAGACTACCATAAACCACATCCCAGCTCCTTTCCTCACCATATCAACAACCCCCCAGAAGGCCACTGGTCAGGGGATGGGCATAATAATGGAAACAGAACCACCACTACCACATCCACCACGTCCATGTTGCAGGTGACCCCTGACGCAGACACCACACAGCGGATTCAGGACGAGCAGTGGGTTAAAGGTTTCctgcagagaagaagaaggagcaaGCCAGCAGCATCAGCCGCAGAAGCAGCTCAGCATCCCCCCAAACAGTCTGTTTCAGATTTCAGACACAAGCTCTACAGCACAGTCCACATGCTCTCAGAGCTCACCCTGCTCTGCCAAACCCTCAAAAACAACCTGGAGAACCAGGGCGTGTGGACCGAGGCCTACTCCCGAGCCGCAGAGCTGAAGAGCAGCCTGCAGGAGAGGCTGGCAGGCCTGCAGGACAGAGAGGTCATCAGCAGGGTCAAGAAGAACCTGGAGCTGATCAAGAAGAAGCGAGCTTGCATGCGCAGGAGAAGAGCGGAGAGGATGGAGGagaagcaggaggaggagaggagggctGCGGAGAGGGAGGCAGCTATGGACAAGTTCCAGCTGAAGCAGATACAAGagttggaggagaagaacaggGAGCGTGAGCTGAAACTGGCTGCAGACGCTGTGCTGTCCGAGGTGAGGAAGAAACAGGCAGATTCTAAGCGAATGCTGGACATTCTCAAGGCTCTGGAAAAGCTAAGGAAACTTCGCAAAGAGGCAGCATCCAGGAAAGGCATGTTTCCAGAGAAGGAGTGTGACGAGGTGTTCGAGGGCCACCTGACGCGGCTGAGGAGCCTGATCAAGAAGCGCACAGCTGTTTATGGGGCCGAGGAGAAGGCCCTGAGGGTCATGCTGGAGGGGGAACAAGAGGAGGAGCGGAAACGGGATCGGGAAAAACGGctgaaaaaagaaagggaaaagCTGCTGCTTAAGAAACAGGAGATAGACTCCATGCTGTTTGGaggtaaaCACTCTCTACCCGTCCTGATCCAAATAAGGAGAGAATGGGATCAGTTTCTGGTTCCAGTAGATCATCCTGACGGCACGTCGATCCCTCCGTGCTGGGTCCTTCCAGACCCTCCAGCAGATGATGTCTGGGCCACTGCTCTTGAGAAGTGAATCTGACTTCCGAACCATTTCTGACTGctgaatcattttatatttgtagtttaCTGATAACATAAGAATAAGAGAATTTCTACAGCACCAGTGTTCACAGATGGTCCAGGAGCTCACTGACATCTAAGCTACAGTatatttttgtaacattttgaataaaaagGAGTGAAGAGTAAAA

Function

NR:

description
PREDICTED: programmed cell death protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53274 False 420 lncRNA 0.46 2 1044108 1045342
XM_022670130.1 True 1918 mRNA 0.55 5 1038573 1045347

Neighbor

gene id symbol gene type direction distance location
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 1639 1011639 ~ 1036934 (+)
ankdd1a ankdd1a,LOC107685207 coding upstream 38289 974937 ~ 1000284 (+)
immp1l immp1l,LOC107594745 coding upstream 356951 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 400678 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 504946 479272 ~ 533627 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 2897 1048244 ~ 1071616 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 37204 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 77996 1123343 ~ 1153288 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding downstream 114425 1159772 ~ 1194746 (+)
LOC103026058 NA coding downstream 247442 1292789 ~ 1306241 (+)
G39539 NA non-coding upstream 71245 964928 ~ 967328 (+)
G39529 NA non-coding upstream 158677 879685 ~ 879896 (+)
G39512 NA non-coding upstream 270959 767338 ~ 767614 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 284736 750822 ~ 753837 (+)
G39506 NA non-coding upstream 287953 745568 ~ 750620 (+)
LOC111192491 NA non-coding downstream 108197 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 140225 1185572 ~ 1186479 (+)
G39621 NA non-coding downstream 163935 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 164617 1209964 ~ 1214713 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding downstream 170955 1216302 ~ 1218795 (+)
plekho2 NA other upstream 75289 922757 ~ 963284 (+)
commd2 commd2 other upstream 747551 281585 ~ 291022 (+)
G39619 mrpl21 other downstream 161440 1206787 ~ 1209096 (+)
G39626 NA other downstream 174459 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 220510 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 365083 1410430 ~ 1413799 (+)
polr2l NA other downstream 375044 1420391 ~ 1427117 (+)

Expression


Co-expression Network