G39616


Basic Information

Item Value
gene id G39616
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1185572 ~ 1186479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53366
TTGGAGGAGCTTCACGCTCGAATGTCATGCACATCAAAAGCTCAAGAATTTTTATccagttaaaataataaaaagcactGAGGGACAATGAGAGACACTAAGAGACAGTGGGGAACTCTGAGGGACAGTAAGGGACACTGACAGATACTGAGAGACAGttgagagacactgagagacaGTTGAGAGATGCTGAGGAACAATAAAGGACACTGAGGGACACTGAGAGACAATAAAGGACACTGACAGACATTGAGGGACATTGAGAGACAGTTGAGAGACACTAAGGAACACTAAGAGACAGTTGAGAGACACTGAGGAATAGTAAGGGACATTGAGAAACAGTTGAGAGACGCTAAGGAACAGTAAGGGAAActgagagacactgagaaacaGCTGAGAGACACAGGAACAGTAAGAGACACTGAGAGACACTAAAAGACAGTTGAGAGACGCTAAGGAACAGTAAGGGAAActgagagacactgagaaacaGCTGAGAGACACAGGAACAGTAAGAGACACTGAGAGACACTAAAAGACAGTTGAGAGACACTAAGGAACAGTAAGGGAAACTGAGAGACACTAAGAGACAGTTGAGAGACACTGAGGAACAGTAAGAGACACTAAAAGACAGTTGAGAGACAGTAAAGGACACTGACAGACACTGAGGGACATTAAGAGACAGTTGTGAGAAACTGAGGAACAGTGAGAGACACTGAGggacaaaccatcactgattgtagaaacttcacactagacctcatgcagtttggactgtttatatttacatttcacattactttataatgcattttagatttaattttGCCCGTTTTTAACAAGGCAATAATATGTGTTCCTTttgtataatacattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53366 True 877 lncRNA 0.42 2 1185572 1186479

Neighbor

gene id symbol gene type direction distance location
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 32284 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 93405 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 113956 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 148638 1011639 ~ 1036934 (+)
ankdd1a ankdd1a,LOC107685207 coding upstream 185288 974937 ~ 1000284 (+)
LOC103026058 NA coding downstream 106310 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 254276 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 514358 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 623123 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 678913 1865392 ~ 1871930 (+)
LOC111192491 NA non-coding upstream 26494 1153544 ~ 1159078 (+)
G39539 NA non-coding upstream 218244 964928 ~ 967328 (+)
G39529 NA non-coding upstream 305676 879685 ~ 879896 (+)
G39512 NA non-coding upstream 417958 767338 ~ 767614 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 431735 750822 ~ 753837 (+)
G39621 NA non-coding downstream 22803 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 23485 1209964 ~ 1214713 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding downstream 29823 1216302 ~ 1218795 (+)
G39629 NA non-coding downstream 39044 1225523 ~ 1227051 (+)
G39661 NA non-coding downstream 84112 1270591 ~ 1271228 (+)
pdcd7 NA other upstream 140225 1038573 ~ 1045347 (+)
plekho2 NA other upstream 222288 922757 ~ 963284 (+)
commd2 commd2 other upstream 894550 281585 ~ 291022 (+)
G39619 mrpl21 other downstream 20308 1206787 ~ 1209096 (+)
G39626 NA other downstream 33327 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 79378 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 223951 1410430 ~ 1413799 (+)
polr2l NA other downstream 233912 1420391 ~ 1427117 (+)

Expression


Co-expression Network