G39619 (mrpl21)


Basic Information

Item Value
gene id G39619
gene name mrpl21
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1206787 ~ 1209096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53369
CAGCAGCTTTATTAAACATACAGACGGGTATCAACCTTCAGATAATCTTCAGATAAATAACCAATAAAGAACacagatatacagtaaaacactgaCGGATCAGATGAGTCCCGGCGACACCTCGATGCTGTTGATCCGCAGAACCGTCTGTGGCTGTACAATAATTCTCTTCCTCTGGAATCTGTGTCTCTTCCTGAACCTCATGTGGACCATGGGCCAGGACTCTGTCTTCTCGATGACCGTAGCCTCGACTCTGACTAAATCACAGCTGACCAGAGGCTTCCCTATGAGTGTGAAATCTTCTCCTCCAACAAGCAGCACCTTTTCCATTATAATTCGATCTCCACACTGCGCCTCAATGTGGTTCTCAATCAGGATCAAATCTTCATTAGTCACTTTCCACTGACGGCTGGCAAAGTGAACGACCGCAAACAGTCTGCCGTATTCCCCGTTCTCAATGAGGGCGTTCACCTTCTGTACAACCGCTGCACAAGACAAAGACACACAAACAATGATTAACATGTAAAAACCTACCCGCTCCCGCtctcagccctcactacaactcccataattc

Function

symbol description
mrpl21 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL21 (mitochondrial ribosomal protein L21).

NR:

description
PREDICTED: 39S ribosomal protein L21, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53369 True 574 TUCP 0.47 4 1206787 1209096

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 12041 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 53499 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 114620 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 135171 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 169853 1011639 ~ 1036934 (+)
LOC103026058 NA coding downstream 83693 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 231659 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 491741 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 600506 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 656296 1865392 ~ 1871930 (+)
G39616 NA non-coding upstream 20308 1185572 ~ 1186479 (+)
LOC111192491 NA non-coding upstream 47709 1153544 ~ 1159078 (+)
G39539 NA non-coding upstream 239459 964928 ~ 967328 (+)
G39529 NA non-coding upstream 326891 879685 ~ 879896 (+)
G39512 NA non-coding upstream 439173 767338 ~ 767614 (+)
G39621 NA non-coding downstream 186 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 868 1209964 ~ 1214713 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding downstream 7206 1216302 ~ 1218795 (+)
G39629 NA non-coding downstream 16427 1225523 ~ 1227051 (+)
G39661 NA non-coding downstream 61495 1270591 ~ 1271228 (+)
pdcd7 NA other upstream 161440 1038573 ~ 1045347 (+)
plekho2 NA other upstream 243503 922757 ~ 963284 (+)
commd2 commd2 other upstream 915765 281585 ~ 291022 (+)
G39626 NA other downstream 10710 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 56761 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 201334 1410430 ~ 1413799 (+)
polr2l NA other downstream 211295 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 552131 1761227 ~ 1794932 (+)

Expression


Co-expression Network