G39625 (slc38a7,LOC107711584,LOC107596460,LOC107683258)


Basic Information

Item Value
gene id G39625
gene name slc38a7,LOC107711584,LOC107596460,LOC107683258
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1216302 ~ 1218795 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53382
TGAGAGAGTAAATCATCATAAAATTTGAATTTTTCCTTGGCGTGAAGCTGAAACATCACATTATATGTTTGGACTGCATTAATTCCCTTTACTGATCATAAACAAAATTcacataattacaaaaaaaaaaaacacctgtaaACCTCCAGCATGCGCCCGAGACTCATCACTGAATACAAACTCGCCCAAATCCTTTAAACACAGATTaacagagttacagcaatttactgCAGAAACAACGTGATGGACAGATCTGAGGATCAGGAAAGAGTCATGAAACCATGCAACCCCAATTTATGACCTTAATGCTTGTGTAAAACAcaacaaaccaaataatataCAACCATGTATAACTATAtcgatatatttatataaaatccaCCCCATATCAAATATCATTTTCTTAACTCTTCTCCCACCAGAAGAGAAATCTTCTTGTCCCTTTACAATAATAGCAAATCATATGACTGTTAAAACTGAACTAAATAATAAACCTAATTCAACTACAGCAGCTCATTATTCTCATTTCAAGCCATTTAGCAGCTGAATAATGGAGTCCCATTTGTATTCATCTTCAATTCTGAATTAAATTCAAGTAAAATTATTACACATCATTAAAAAAGCACGACAAAAACATACAGCTTCAAGTTTGTGATGACAAAATGCCACAGAAATGTAAAACCAAATGTACAATAAAAACTTCTGCATaattaaactgaaacagaaagtcattcagagtgggTACTGGTGTgcgtgtgtagtgtgtgtacgtgtttagtgtgtgtgtatagtgtgtgtgtgtgtgtgtgtgtgtttgtgaacatAAATAATCTAAAAGCTCCTTTGCTGTTGTTACTGGGAAaattaattatctaATTGGTCTGCACACACAGTGTTGTAGTTTCTGATTGGCAAAAATAAACTCGAATGAAACTTCCAAAATCCTTACGATCCTTTCACACACAGCTACAGGAGGACAGCTGATGCTGCATGCTGATTGGCCCTCAGTCTGATTATGGAGGTATGGGTGTAGCTTGTGTTTTTGTCTGAGTGTCTTTTTACAATTGTAGGTTTAAAATAATCAGAAGAACGAGGTCCACTGGGTGGTTTAGTTGATGAATGTTGCTCTCCGGCTACGAGCTTTCATCCTGGTTGATGATGTCTTTGTAGATGGCGTTAGTGGTGGTCTGGCCAAAGATGAATGCTCCAATTGTAACCATGACAACCCCATAAACCACGAGAGCCATCCAGCTGGCCGAACGGACATCATGTTCCGAGAGTTTAGCCTGAATTAAACACAAACCTGGAAAGACGAAGATGAAGCAGGCGGCGAGACCCCCGATCAGAGATATGACTCGGCCGATGTCGGGGATGAAGAGAGCGAGGAGGAGCGTGAAGCAGAACCAGACCAGGGTTTGGATCAGACGCCTCCGCCGCTCTCCAGCCACGTCAGTGTCCACCTCCTCACCTTTAAACCTCAACCACAGACCTTCTATCACTGccctgcagcacacacacacacacacacagtagcatAAAGACAGACATCGTTAACATACACACCATACATCatacacaaaccacacacactcaaaatgaGGTGCAGTAAACACTGGCAAAATATCACAttccatatttttcgcactgtaaggcgcagcagattataaggcgcactattaataaagtctattttttggtctattttatacataaggcaaacaagtgctggatgttaatctacacagtttatttgggtgagtaaagcacttctgtttatttacagtaagcttagatttccagattttcaacAAAGccggagcattagcattagtggctaaccgctagcgcctgacagtgctacactaaggaactctgagtgctctggtaagccagggtgatattagcgggtaatgctaatgttgctccagcagtgctagctagggtaAGCAGCAGtttacaggccaataatactcacctctgaacagccaaagagcta

Function

symbol description
slc38a7 Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in mesoderm; musculature system; myotome; somite; and yolk syncytial layer. Orthologous to human SLC38A7 (solute carrier family 38 member 7).

NR:

description
putative sodium-coupled neutral amino acid transporter 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53382 True 1996 lncRNA 0.40 5 1216302 1218795

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 21556 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 63014 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 124135 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 144686 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 179368 1011639 ~ 1036934 (+)
LOC103026058 NA coding downstream 73994 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 221960 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 482042 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 590807 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 646597 1865392 ~ 1871930 (+)
G39622 NA non-coding upstream 1589 1209964 ~ 1214713 (+)
G39621 NA non-coding upstream 6569 1209282 ~ 1209733 (+)
G39616 NA non-coding upstream 29823 1185572 ~ 1186479 (+)
LOC111192491 NA non-coding upstream 57224 1153544 ~ 1159078 (+)
G39539 NA non-coding upstream 248974 964928 ~ 967328 (+)
G39629 NA non-coding downstream 6728 1225523 ~ 1227051 (+)
G39661 NA non-coding downstream 51796 1270591 ~ 1271228 (+)
G39665 NA non-coding downstream 60719 1279514 ~ 1280445 (+)
G39666 NA non-coding downstream 63526 1282321 ~ 1284445 (+)
LOC111192495 NA non-coding downstream 80176 1298971 ~ 1299827 (+)
G39619 mrpl21 other upstream 7206 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 170955 1038573 ~ 1045347 (+)
plekho2 NA other upstream 253018 922757 ~ 963284 (+)
commd2 commd2 other upstream 925280 281585 ~ 291022 (+)
G39626 NA other downstream 1011 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 47062 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 191635 1410430 ~ 1413799 (+)
polr2l NA other downstream 201596 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 542432 1761227 ~ 1794932 (+)

Expression


Co-expression Network