G39626


Basic Information

Item Value
gene id G39626
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1219806 ~ 1220486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53383
tgtGCCTGTGTAGACAAACAGGCAGATGATCATGCTGACGGTCACCACGCCTCCCCAAGGCCGAATCTCAGCTTTCTTCATACTGTTAAACACCGGAACACTGCTGACATGACActgatagagagtgagagacagagagagagagagagaaaacacacacacttactcactctctctgactcactctctctgactcactttcacaaacacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacactctcacacacacctgaaaGCCAAAGCAGATTGTGGGCATGGCGTTGAAAACATCAGTCCAGGATGTCGGGCTGTTGGGATGTCTCCGGGAGTAATATTTTTGTCAGGTAAGAAGTATTTGATGATGACAACGATTGTCACGTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53383 True 559 TUCP 0.48 2 1219806 1220486

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 25060 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 66518 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 127639 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 148190 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 182872 1011639 ~ 1036934 (+)
LOC103026058 NA coding downstream 72303 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 220269 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 480351 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 589116 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 644906 1865392 ~ 1871930 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding upstream 1011 1216302 ~ 1218795 (+)
G39622 NA non-coding upstream 5093 1209964 ~ 1214713 (+)
G39621 NA non-coding upstream 10073 1209282 ~ 1209733 (+)
G39616 NA non-coding upstream 33327 1185572 ~ 1186479 (+)
LOC111192491 NA non-coding upstream 60728 1153544 ~ 1159078 (+)
G39629 NA non-coding downstream 5037 1225523 ~ 1227051 (+)
G39661 NA non-coding downstream 50105 1270591 ~ 1271228 (+)
G39665 NA non-coding downstream 59028 1279514 ~ 1280445 (+)
G39666 NA non-coding downstream 61835 1282321 ~ 1284445 (+)
LOC111192495 NA non-coding downstream 78485 1298971 ~ 1299827 (+)
G39619 mrpl21 other upstream 10710 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 174459 1038573 ~ 1045347 (+)
plekho2 NA other upstream 256522 922757 ~ 963284 (+)
commd2 commd2 other upstream 928784 281585 ~ 291022 (+)
LOC111192492 NA other downstream 45371 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 189944 1410430 ~ 1413799 (+)
polr2l NA other downstream 199905 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 540741 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1377206 2597692 ~ 2811496 (+)

Expression


Co-expression Network