G39629


Basic Information

Item Value
gene id G39629
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1225523 ~ 1227051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53388
TTAAGTTTCATCTCTGTATTTATTACGTACAGCTTTAAATGTGACAAGAAACAGCAAAACATCTGGAAACAATGATGTAATAtaaggcagagaaagagagagagaaagagggagagagagagaaagagaaagagagggggcaGTACAGCAGAGTTTAATACAGGAATGGaacatttggtaaaaaaaaatgtatttaattaaggAGAGGAGTTTAAATAAGTctgatttacagaaaaatatctgatgaaataaataatcaataagaATCACAGTATATTCATTTTCAGGCAGGGCAGGGGGAGGGGTTAAAGCCACAGTGATCAGCATCAACGCTTGATTTGCTGGTTGAGTTTGAGAACATGCATCAAAGTCAGCTGGGGTCAGGGTAAAGGTAAAAGGTCAGCTGGGGTCAGGGTAAAGGTAAAAGGTCAGAGATCAGAATAAACAAATTTGGTTAACAATGTGGCTGCAGTGACCATTCCCACACTGCACTATTTATAATAGTATGACCacatccttgtttctacacccattatccatcTTATCAGCTTTACTAATCATATAgaacactttacacactttattatactcctttgttcttcaatactcagggCTTCActggatagaccaccacagagcagctactaTTATTATTCGGGTGGTTGGTAGTtattcttagcactgcagtggttagcagtgattagcatggtggtggtgtatgaggtgttagtgtgtgttgttctggtacagtgagtggatcagatacagcagtgctgctgtagtttttaaacactgtgtttaaacacttactgtcctccactctattacacactcctgcctacagctgaaacaccttgtaggtaaagtaaagtcagagacagaagctctgaatctgttgctgcacagtttttacagtgttgCTCATCCTCTAGTCTTTCATCAGAGGGTACAGGACTCCGCCCACAGGACCAGGCCCACATGACTCTGCCCAGAGGACTGCAACCACAATACCCTTCCTATAGGagggtaataataaagtatgcagagaaacagatacaggactacagtctgtaattatagaactacaaagtgtcccaTATGATCATTGGCGCTGCATAAATGGATAAAAGATGTAGAAACAAGGAATgttgttattataatattatgcttGATAATTGTGTGTGAACTAACTAatcattaatacattaaaacatcttATCTCATCTTTTGCCTCTTTCACCTTTTGTACTCTCACATACCCAAAGTGGGTGTGATAGTAGTGAAATTTGAGAATGGTGTCTGTAGCCATTTAATACTGAGGTCTGGGGTTCAGGAGAGATGAAGGGACCGAATCAGTTTGATGGCTCCTTGCACAGGACGATCTCCAGCTCAGTGCGGAATAGCTTTCCTCCGTCAGACAGAGCCATGATGCTCTTCTTGGAACTGGCCAGAGTCTGTGAATCAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53388 True 1468 lncRNA 0.40 2 1225523 1227051

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 30777 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 72235 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 133356 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 153907 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 188589 1011639 ~ 1036934 (+)
LOC103026058 NA coding downstream 65738 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 213704 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 473786 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 582551 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 638341 1865392 ~ 1871930 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding upstream 6728 1216302 ~ 1218795 (+)
G39622 NA non-coding upstream 10810 1209964 ~ 1214713 (+)
G39621 NA non-coding upstream 15790 1209282 ~ 1209733 (+)
G39616 NA non-coding upstream 39044 1185572 ~ 1186479 (+)
LOC111192491 NA non-coding upstream 66445 1153544 ~ 1159078 (+)
G39661 NA non-coding downstream 43540 1270591 ~ 1271228 (+)
G39665 NA non-coding downstream 52463 1279514 ~ 1280445 (+)
G39666 NA non-coding downstream 55270 1282321 ~ 1284445 (+)
LOC111192495 NA non-coding downstream 71920 1298971 ~ 1299827 (+)
G39673 NA non-coding downstream 96830 1323881 ~ 1324207 (+)
G39626 NA other upstream 5037 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 16427 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 180176 1038573 ~ 1045347 (+)
plekho2 NA other upstream 262239 922757 ~ 963284 (+)
commd2 commd2 other upstream 934501 281585 ~ 291022 (+)
LOC111192492 NA other downstream 38806 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 183379 1410430 ~ 1413799 (+)
polr2l NA other downstream 193340 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 534176 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1370641 2597692 ~ 2811496 (+)

Expression


Co-expression Network