G45870


Basic Information

Item Value
gene id G45870
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7755114 ~ 7761173 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52166
AGAACATCAGATGAAAAGACATCTTTGACGTCCTTGATGGTGGCTCCTGCTTTTGTATACATGTCGTCGGAGAACTTGGCAGATTCCCCAGCACCAGACTCCACCACCACATTAAAGCCCTGCTTGATGAGAGCTTCCACTCCGGCTGGAGAGATGGCCACTCGACGCTCATTCTGAAAGATTTCCTTAGGAACGCCAACAGTCAGCTGTTTGTATGGAATGCCTGGACTAGCGAGACGACTGAGGGCTTGATGGGTCCTAAAGAAGCGCACACATGGTGTCTTCACCGCCCGCACACTATGCAGCTTAGCACAGGCCAGCCCGGAGAACAGGGGGCTGGAACAGCTGGTGGCTACCACACGCAGAAGACTCGCCATCGGAGACACAAGGAGGAGCCGTGCAGTTGGAATAACCCTCCTCCTACCGAGACGAGACAGAGCATCAATGAGCGACCTTTGAATTGCAGGGACGCAGA
>TU52167
AGAACATCAGATGAAAAGACATCTTTGACGTCCTTGATGGTGGCTCCTGCTTTTGTATACATGTCGTCGGAGAACTTGGCAGATTCCCCAGCACCAGACTCCACCACCACATTAAAGCCCTGCTTGATGAGAGCTTCCACTCCGGCTGGAGAGATGGCCACTCGACGCTCATTCTGAAAGATTTCCTTAGGAACGCCAACAGTCAGCTGTTTGTATGGAATGCCTGGACTAGCGAGACGACTGAGGGCTTGATGGGTCCTAAAGAAGCGCACACATGGTGTCTTCACCGCCCGCACACTATGCAGCTTAGCACAGGCCAGCCCGGAGAACAGGGGGCTGGAACAGCTGGTGGCTACCACACGCAGAAGACTCGCCATCGGAGACACAAGGAGGAGCCGTGCAGTTGGAATAACCCTCCTCCTACATGTGAGGGAGAGAGAGAGAGGGAGAGAG

Function

NR:

description
PREDICTED: tetraspanin-9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52166 False 475 lncRNA 0.30 3 7755114 7761173
TU52167 True 453 lncRNA 0.45 2 7757701 7761173

Neighbor

gene id symbol gene type direction distance location
CI01000006_07731668_07752706 CCDC80L2 coding downstream 1009 7731660 ~ 7754105 (-)
CI01000006_07658119_07685010 NA coding downstream 68945 7657168 ~ 7686169 (-)
CI01000006_07636757_07648169 NA coding downstream 105789 7636693 ~ 7649325 (-)
CI01000006_07586562_07627355 NA coding downstream 126666 7585022 ~ 7628448 (-)
CI01000006_07522441_07525197 NA coding downstream 229301 7521049 ~ 7525813 (-)
CI01000006_07836338_07852081 FGF10A coding upstream 74445 7835618 ~ 7852081 (-)
CI01000006_07879567_07902271 RAI14 coding upstream 118355 7879528 ~ 7902271 (-)
CI01000006_07929484_07931926 NA coding upstream 168044 7929217 ~ 7931926 (-)
CI01000006_07942201_07958652 SLC45A2 coding upstream 181004 7942177 ~ 7958652 (-)
CI01000006_07960990_07974726 AMACR coding upstream 199787 7960960 ~ 7975623 (-)
G45884 NA non-coding downstream 26178 7728393 ~ 7728936 (-)
G45877 NA non-coding downstream 42934 7709119 ~ 7712180 (-)
G45865 NA non-coding downstream 65972 7688754 ~ 7689142 (-)
G45813 NA non-coding downstream 171432 7576909 ~ 7583682 (-)
G45857 NA non-coding downstream 185724 7569167 ~ 7569390 (-)
G45868 NA non-coding upstream 30797 7791970 ~ 7796624 (-)
G45902 NA non-coding upstream 38696 7799869 ~ 7800121 (-)
G45903 NA non-coding upstream 41361 7802534 ~ 7802749 (-)
G45928 NA non-coding upstream 69972 7831145 ~ 7832596 (-)
G45960 NA non-coding upstream 169229 7930402 ~ 7930694 (-)
CI01000006_07500281_07507754 NA other downstream 244158 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 778242 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 3193046 4559509 ~ 4562068 (-)
G43549 NA other downstream 3399686 4352510 ~ 4355428 (-)
G43102 NA other downstream 4821130 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 2721683 10453613 ~ 10484006 (-)
G47658 NA other upstream 3269738 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 3889190 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 4573236 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 4589586 12569205 ~ 12582487 (-)

Expression


Co-expression Network