LOC111192492


Basic Information

Item Value
gene id LOC111192492
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1265857 ~ 1268385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53435
tttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTATGACTCCTg
>TU53436
tttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTATGACTCCTg
>XM_022669481.1
AGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTA
>XM_022669482.1
GTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTA
>XM_022669483.1
GTAGAGCTGATGTCATGTAGGATTTTCTGGTATGAGAGAGGCAGTCAGACAGCTTGTCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGGAGCAGACCCTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAGTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53435 False 273 lncRNA 0.50 3 1265944 1268385
TU53436 False 273 lncRNA 0.50 2 1265944 1268385
XM_022669481.1 False 301 mRNA 0.47 2 1267865 1268376
XM_022669482.1 False 351 mRNA 0.47 3 1266624 1268376
XM_022669483.1 True 351 mRNA 0.47 2 1265857 1268376

Neighbor

gene id symbol gene type direction distance location
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 71111 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 112569 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 173690 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 194241 1048244 ~ 1071616 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 228923 1011639 ~ 1036934 (+)
LOC103026058 NA coding downstream 24404 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 172370 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 432452 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 541217 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 597007 1865392 ~ 1871930 (+)
G39629 NA non-coding upstream 38806 1225523 ~ 1227051 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding upstream 47062 1216302 ~ 1218795 (+)
G39622 NA non-coding upstream 51144 1209964 ~ 1214713 (+)
G39621 NA non-coding upstream 56124 1209282 ~ 1209733 (+)
G39616 NA non-coding upstream 79378 1185572 ~ 1186479 (+)
G39661 NA non-coding downstream 2206 1270591 ~ 1271228 (+)
G39665 NA non-coding downstream 11129 1279514 ~ 1280445 (+)
G39666 NA non-coding downstream 13936 1282321 ~ 1284445 (+)
LOC111192495 NA non-coding downstream 30586 1298971 ~ 1299827 (+)
G39673 NA non-coding downstream 55496 1323881 ~ 1324207 (+)
G39626 NA other upstream 45371 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 56761 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 220510 1038573 ~ 1045347 (+)
plekho2 NA other upstream 302573 922757 ~ 963284 (+)
commd2 commd2 other upstream 974835 281585 ~ 291022 (+)
LOC111192494 NA other downstream 142045 1410430 ~ 1413799 (+)
polr2l NA other downstream 152006 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 492842 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1329307 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 2114257 3382642 ~ 3401938 (+)

Expression


Co-expression Network