G39662 (arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711)


Basic Information

Item Value
gene id G39662
gene name arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1327223 ~ 1334616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53439
CCTTGGTATTTGCTGCAATCCAATTAGAGGTTTCACTGTCGTCATCACATTTCTTAATCCACTTTCTCAACCATTTACATTTCACAGGGTCATGCCAGTTTTCTCCACAATTGAAGCAGAACTGTCTCCCGCATTTACAGCGCACTGGTTTGGCATCTGGATACTGGACCTTAACCACATGATGGCAGTCAGGGGCTGgacaccattttaaaagtctatTACACTCTACAAAACTGTTAGTGATTAGATGTTGGTACTTTAACTTCACTTTTGAATCAGTGATCAGCcgcATTACAGTGTTGTCATCTACCAAAATATCACAGTTGTGAGCAGGACATGAGATTGTCTGCCCCATCCCCTCCTCAATAATTTTGGTAGTCAGGTAGTCCCCCCAGCACTGCATGCAGAACTTGTGCCCACATTCCAAACCTGTAAAATACGAGTTTGGGAAGTTGAGATAGCAAATCTGGCAGTGCATGTCCTGATTGGAGGAGCGTGTACTCATGGGTCGCGTCCTCGCCTTTTTGCTGGGGTTAATAACATGGCACTCTGAGAACAACTTGTCGAGATTTCCATCAAAATACCTTTCCATAAGCTTTTCTTTGTCCCAGTTGAAATGACTGAGGAGTATTCTGGTTATAGTTGCTGGGTTctgaaacaaagacaacacaaacaGAAACATTTCATCATCAACGTTTCAGATTCACACACAAACTAATACTCAACAGCAGTGTACATTATAACAGGAGAtcctctgattggctcagaGAGGCCTAACAAGCACTtttcactaaatattttaaatttaatcctgcaatgccaatattacatgttatagctaaCCAATGTGTACACTCACACAGTTATAAACTCACAGTATA
>TU53442
GGGCACAAGGTCACTGTGTGTTTTCACAGATACACTTATCATTAATTCTTATtagaatatcacaatataaaatttttaacatttccGGGTTTAGCATCCTGTATCTTACAGGTCTTACCAGAACTGTCTCCCGCATTTACAGCGCACTGGTTTGGCATCTGGATACTGGACCTTAACCACATGATGGCAGTCAGGGGCTGgacaccattttaaaagtctatTACACTCTACAAAACTGTTAGTGATTAGATGTTGGTACTTTAACTTCACTTTTGAATCAGTGATCAGCcgcATTACAGTGTTGTCATCTACCAAAATATCACAGTTGTGAGCAGGACATGAGATTGTCTGCCCCATCCCCTCCTCAATAATTTTGGTAGTCAGGTAGTCCCCCCAGCACTGCATGCAGAACTTGTGCCCACATTCCAAACCTGTAAAATACTACAGAAGAGAAGCACTGAATCAGAGCAGGGGAAACACCACATCAttatctctcacacactcacacagacacacacacacacacacacaaatacaactaaacacactaaaacagtcACTTCTCGGAAAATCAGGTGGAGATCAGTAAATCCTACTGTatctttttttactcttttgtgTTGGTTAATGTGGAAGCATAaatatcagcactgcactggcttaaAGTTAAATTCTGCACAGACCATAAAATACTGCAGGTGGAAAGGCTTTGTGTgttaaagctccccaactttggaataacC

Function

symbol description
arih1l Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ARIH1 (ariadne RBR E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase arih1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53439 True 881 lncRNA 0.41 8 1327223 1334616
TU53442 False 743 lncRNA 0.41 4 1327554 1330780

Neighbor

gene id symbol gene type direction distance location
LOC103026058 NA coding upstream 20982 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 132477 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 173935 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 235056 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 255607 1048244 ~ 1071616 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 106139 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 366221 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 474986 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 530776 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 548187 1882803 ~ 1948422 (+)
G39673 NA non-coding upstream 3016 1323881 ~ 1324207 (+)
LOC111192495 NA non-coding upstream 27396 1298971 ~ 1299827 (+)
G39666 NA non-coding upstream 42778 1282321 ~ 1284445 (+)
G39665 NA non-coding upstream 46778 1279514 ~ 1280445 (+)
G39661 NA non-coding upstream 55995 1270591 ~ 1271228 (+)
G39676 NA non-coding downstream 5207 1339823 ~ 1351454 (+)
G39698 NA non-coding downstream 94076 1428692 ~ 1429975 (+)
G39704 NA non-coding downstream 123622 1458238 ~ 1459551 (+)
G39717 NA non-coding downstream 254546 1589162 ~ 1589972 (+)
G39718 NA non-coding downstream 261804 1596420 ~ 1684465 (+)
LOC111192492 NA other upstream 58838 1265857 ~ 1268385 (+)
G39626 NA other upstream 106737 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 118127 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 281876 1038573 ~ 1045347 (+)
plekho2 NA other upstream 363939 922757 ~ 963284 (+)
LOC111192494 NA other downstream 75814 1410430 ~ 1413799 (+)
polr2l NA other downstream 85775 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 426611 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1263076 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 2048026 3382642 ~ 3401938 (+)

Expression


Co-expression Network