G39676


Basic Information

Item Value
gene id G39676
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1339823 ~ 1351454 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53465
TCACTATGATACATGATACAGCCATTATTCTTGATAATGTCCCACTGGATTCTTTTTCAATGACTGAAAATAATACGGGTTTATacctaaaattaaataaatcacataATAAAGACAGTGCTGTACAAAACCACCTTGAAAAGCACAGCTGTGAGGCCTTTCCGATTTATAATATATAGAACACCtgtgtctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU53469
TCACTATGATACATGATACAGCCATTATTCTTGATAATGTCCCACTGGATTCTTTTTCAATGACTGAAAATAATACGGGTTTATacctaaaattaaataaatcacataATAAAGACAGTGCTGTACAAAACCACCTTGAAAAGCACAGCTGTGAGGCCTTTCCGATTTATAATATATAGAACACCtgtgtctttctgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttagtttaaCCGTTAACCCCAATATATTCCACACTGTGGTTTATTACTGCCTAATTAAATTAatcttaaaaactcattaaatTTTTTCTCTCAATCCCTCCAATCTAGGGAAACTTGCCCAGTCATCCTCTAAAccctttttaatattaaaatggaGGAGGGATACACACAGGGAgttgtgcagcaaaaaatagtCCCTAGAGAAACAGTATTTGCTGTTTGTTTGGATCGTTTTTGGAAAGATTATTTGGAAAATGTGGTTCTATATGGAACTACACtgccatgccaaaagtcacgggataGCAGTTTGTAACTTGGACATAAAGCGTTTCTTTGAAGGATgaacacagtggacagtgcagtggggggtaatgatggtgacccaCAGCTTCTGGCTGTAATCACCTGCCCACATATTCCACAGGTCAGTAGAGGAGACCACGTCCACATATCCCATAGGTCAGTGTAggagaccccgcccacatatTCCACAGGTCAGTAAAGGAGACCACACCCACATAtgccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccacccacatatcccacagGTCAGTAGAGGAGACCAcacccacatatcccacaggtaaGTGGAGGAGACCACACCCACAtattccacaggtcagtgcag
>TU53471
TCACTATGATACATGATACAGCCATTATTCTTGATAATGTCCCACTGGATTCTTTTTCAATGACTGAAAATAATACGGGTTTATacctaaaattaaataaatcacataATAAAGACAGTGCTGTACAAAACCACCTTGAAAAGCACAGCTGTGAGGCCTTTCCGATTTATAATATATAGAACACCtgtgtctttctgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttagtttaaCCGTTAACCCCAATATATTCCACACTGTGGTTTATTACTGCCTAATTAAATTAatcttaaaaactcattaaatTTTTTCTCTCAATCCCTCCAATCTAGGGAAACTTGCCCAGTCATCCTCTAAAccctttttaatattaaaatggaGGAGGGATACACACAGGGAgttgtgcagcaaaaaatagtCCCTAGAGAAACAGTATTTGCTGTTTGTTTGGATCGTTTTTGGAAAGATTATTTGGAAAATGTGGTTCTATATGGAACTACACtgccatgccaaaagtcacgggataGCAGTTTGTAACTTGGACATAAAGCGTTTCTTTGAAGGATgaacacagtggacagtgcagtggggggtaatgatggtgacccaCAGCTTCTGGCTGTAATCACCTGCCCACATATTCCACAGGTCAGTAGAGGAGACCACGTCCACATATCCCATAGGTCAGTGTAggagaccccgcccacatatTCCACAGGTCAGTAAAGGAGACCACACCCACATAtgccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccgcccacatattccacaggtcagt
>TU53474
TCACTATGATACATGATACAGCCATTATTCTTGATAATGTCCCACTGGATTCTTTTTCAATGACTGAAAATAATACGGGTTTATacctaaaattaaataaatcacataATAAAGACAGTGCTGTACAAAACCACCTTGAAAAGCACAGCTGTGAGGCCTTTCCGATTTATAATATATAGAACACCtgtgtctttctgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgagtgtgtgttagtttaaCCGTTAACCCCAATATATTCCACACTGTGGTTTATTACTGCCTAATTAAATTAatcttaaaaactcattaaatTTTTTCTCTCAATCCCTCCAATCTAGGGAAACTTGCCCAGTCATCCTCTAAAccctttttaatattaaaatggaGGAGGGATACACACAGGGAgttgtgcagcaaaaaatagtCCCTAGAGAAACAGTATTTGCTGTTTGTTTGGATCGTTTTTGGAAAGATTATTTGGAAAATGTGGTTCTATATGGAACTACACtgccatgccaaaagtcacgggataGCAGTTTGTAACTTGGACATAAAGCGTTTCTTTGAAGGATgaacacagtggacagtgcagtggggggtaatgatggtgacccaCAGCTTCTGGCTGTAATCACCTGCCCACATATTCCACAGGTCAGTAGAGGAGACCACGTCCACATATCCCATAGGTCAGTGTAggagaccccgcccacatatTCCACAGGTCAGTAAAGGAGACCACACCCACATAtgccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccgcccacatatcccacaggtcagtgcaggagaccccacccacatatcccacagGTCAGTAGAGGAGACCAcacccacatatcccacaggtaaGTGGAGGAGACCACACCCACAtattccacaggtcagtgcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53465 False 232 lncRNA 0.36 2 1339823 1351454
TU53469 True 956 lncRNA 0.44 4 1339823 1342388
TU53471 False 882 lncRNA 0.43 2 1339823 1340984
TU53474 False 956 lncRNA 0.44 4 1339823 1342388

Neighbor

gene id symbol gene type direction distance location
LOC103026058 NA coding upstream 33582 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 145077 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 186535 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 247656 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 268207 1048244 ~ 1071616 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 89301 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 349383 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 458148 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 513938 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 531349 1882803 ~ 1948422 (+)
G39662 arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711 non-coding upstream 5207 1327223 ~ 1334616 (+)
G39673 NA non-coding upstream 15616 1323881 ~ 1324207 (+)
LOC111192495 NA non-coding upstream 39996 1298971 ~ 1299827 (+)
G39666 NA non-coding upstream 55378 1282321 ~ 1284445 (+)
G39665 NA non-coding upstream 59378 1279514 ~ 1280445 (+)
G39698 NA non-coding downstream 77238 1428692 ~ 1429975 (+)
G39704 NA non-coding downstream 106784 1458238 ~ 1459551 (+)
G39717 NA non-coding downstream 237708 1589162 ~ 1589972 (+)
G39718 NA non-coding downstream 244966 1596420 ~ 1684465 (+)
G39724 NA non-coding downstream 301993 1653447 ~ 1653820 (+)
LOC111192492 NA other upstream 71438 1265857 ~ 1268385 (+)
G39626 NA other upstream 119337 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 130727 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 294476 1038573 ~ 1045347 (+)
plekho2 NA other upstream 376539 922757 ~ 963284 (+)
LOC111192494 NA other downstream 58976 1410430 ~ 1413799 (+)
polr2l NA other downstream 68937 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 409773 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1246238 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 2031188 3382642 ~ 3401938 (+)

Expression


Co-expression Network