LOC111192494


Basic Information

Item Value
gene id LOC111192494
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1410430 ~ 1413799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53498
TGTCCTCCACTCCCAGGCTGCATCCTCCATCACTCACTCCGCTTCCCTCCTTCTTCTCTGTTTCTCCTTGAGGTCGAACTCTGGGCCTGTCTGCTGATCTCCAGGCCTGCTCCTCCACCGGTCTGTCTGTAGTGTGTCAGTGCTGTGAGCTCGGCGTGTGGAGggacacagcagcagcagcagcagcagATCTCACCAGTTGAATCCGGATAACTGAGAGGATAGGAAGTTCTTCTCCAGCAGACAGAGCTTCATATCTAACAGATCCACATGGATACTAAGGCCAAGAGCGGCTCTAAGTCAGCGTCCCGGGCAGAGAAGAAGGATCCAGCCCCTCTGAAACCGGACCCCGTCCCTGCAGAACCCTCCCCACCCACTGAACCAGAGAAAACAGCAGATGATGGAGCAGCCAGCCAGGAGGGGGCGCCGGAGGGGGGCGAGGGAAAAGGAAGTGGGTGTGAAATGCTGGAGCACCTGAAGCCCTTCCTCATCGGGGGAGCCGTTGTTGCCCTCGGGGCCATTTTGGTTGGCGCGATCTTATTGGCCAAGAAAAACTGATGATGTAGAGttattggttgattggttaacGAGTGATTGTGTCACACATTATCAGAGGGGCATAGTTTAAGTTTATGACTTCAGTTATGTATAAAGTAAtccactgaactgaactgactgAAATGTGTGCATTATTtctttatgaataaaatatatcacaTTAACTTTAAGTGGTCatacataaatatta
>XR_002649917.1
GTACATCCCTCTGTTCTGTCCTCCACTCCCAGGCTGCATCCTCCATCACTCACTCCGCTTCCCTCCTTCTTCTCTGTTTCTCCTTGAGGTCGAACTCTGGGCCTGTCTGCTGATCTCCAGGCCTGCTCCTCCACCGGTCTGTCTGTAGTGTGTCAGTGCTGTGAGCTCGGCGTGTGGAGggacacagcagcagcagcagcagcagTTCTGTCTCTCAGATCTCACCAGTTGAATCCGGATAACTGAGAGGATAGGAAGTTCTTCTCCAGCAGACAGAGCTTCATATCTAACAGATCCACATGGATACTAAGGCCAAGAGCGGCTCTAAGTCAGCGTCCCGGGCAGAGAAGAAGGATCCAGCCCCTCTGAAACCGGACCCCGTCCCTGCAGAACCCTCCCCACCCACTGAACCAGAGAAAACAGCAGATGATGGAGCAGCCAGCCAGGAGGGGGCGCCGGAGGGGGGCGAGGGAAAAGGAAGTGGGTGTGAAATGCTGGAGCACCTGAAGCCCTTCCTCATCGGGGGAGCCGTTGTTGCCCTCGGGGCCATTTTGGTTGGCGCGATCTTATTGGCCAAGAAAAACTGATGATGTAGAGttattggttgattggttaacGAGTGATTGTGTCACACATTATCAGAGGGGCATAGTTTAAGTTTATGACTTCAGTTATGTATAAAGTAAtccactgaactgaactgactgAAATGTGTGCATTATTtctttatgaataaaatatatcacaTTAACTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53498 False 748 TUCP 0.51 2 1410446 1413799
XR_002649917.1 True 757 lncRNA 0.51 2 1410430 1413779

Neighbor

gene id symbol gene type direction distance location
LOC103026058 NA coding upstream 104189 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 215684 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 257142 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 318263 1082551 ~ 1092167 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding upstream 338814 1048244 ~ 1071616 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 26956 1440755 ~ 1445223 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 287038 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 395803 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 451593 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 469004 1882803 ~ 1948422 (+)
G39676 NA non-coding upstream 58976 1339823 ~ 1351454 (+)
G39662 arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711 non-coding upstream 75814 1327223 ~ 1334616 (+)
G39673 NA non-coding upstream 86223 1323881 ~ 1324207 (+)
LOC111192495 NA non-coding upstream 110603 1298971 ~ 1299827 (+)
G39666 NA non-coding upstream 125985 1282321 ~ 1284445 (+)
G39698 NA non-coding downstream 14893 1428692 ~ 1429975 (+)
G39704 NA non-coding downstream 44439 1458238 ~ 1459551 (+)
G39717 NA non-coding downstream 175363 1589162 ~ 1589972 (+)
G39718 NA non-coding downstream 182621 1596420 ~ 1684465 (+)
G39724 NA non-coding downstream 239648 1653447 ~ 1653820 (+)
LOC111192492 NA other upstream 142045 1265857 ~ 1268385 (+)
G39626 NA other upstream 189944 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 201334 1206787 ~ 1209096 (+)
pdcd7 NA other upstream 365083 1038573 ~ 1045347 (+)
plekho2 NA other upstream 447146 922757 ~ 963284 (+)
polr2l NA other downstream 6592 1420391 ~ 1427117 (+)
muc2 LOC108439647 other downstream 347428 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1183893 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1968843 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 2247876 3661675 ~ 3683184 (+)

Expression


Co-expression Network