G45868


Basic Information

Item Value
gene id G45868
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7791970 ~ 7796624 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52164
TCGGTTCTCTTATCAGGATGTTTATTAAGAGGGATGCTCTGTGATACAGTGAAGAGAGAAAAAACATTTCACAGTATGACATTAATTCCTCACCATGGCACAATGAAACATCTGAAGATTCACCCTCTTCCCTCCCATGTATTGCGTCAAAGCAGAATTATCAAAGCATCGTTTCTACACAACAACCTGTCTACACAAACATATCCTGAAGAAGCGGGAGGGAATGCAAAACTCTTTATTAACCCAGATGATGTTTGATAAATACTTCCTTTCCCTTGCAGCAATTGATTCCCTTCACATATTAAAACATTCCTGAATTAGATGATATTCAGCATCTAAGCTGCGGCTTATTTGCAAAGTATGATTAACCTTCCTACATCCACAAAATCTACATCGAAGAACAAACTATGTGCCCAATGCAGCCCAGCTCGAGGCGAACATTAGCGGAGGAGTGTGAGATCGGGGAGGTGAGGGATTGTTTTGGTCGAGTTGAAACTGTGGAGAGGTAGGGTCGTTGTAATGGTCTGTCTTGGTTCCTGTATCTCATAGGATCTTTTCCATTAGGTCCCGGTTGGTAAAGTACAGTACATCTGTTCAAATCCCTGTCAAATACTGCAGAGGATTACTGCTGAGAACAAATTTGGGAGCACAACAGGGCAGATATACAGTAACTACTCATACTAACATCACTGCTACAGTGACATTCGCTTGAATTAAGAGTGGTTGGGGAATACAAATCATCTTGTGGAGGAGCCACAGGTGTTTGGGATTCTGTGCGTAAATCTTTAGTGATATTAGCTAGTACTTTAATTAATCTCAGCAGCGATCCTTCAAAGCTTCGTGCTGGGAAATGTTGCGAAATGGTCCTCTGAAGCTGTATCTAAAAAGGTTGATTCCTTGCTTGGAACACCACCATATACCACCAGCTGGTCACTTAATGCACATGGTAAGTTCACAAGACAAACAATTAAGCAAGAAAAAGGGAAAAAAAGCATACAGTTTGGAGTTGTCTATAGCTTTCAAATTAGTCATATGTATGCAAACACTATCCAAAAAAAAACAAAAAACCTTGTTTTTAAAAACAGATTGCTTTGTTATATAAAAATTTAACTATAATACATACAAAACCAGATGACAACTGGTTGGCTTCATTTATTAATGCTAATTAATGTGATGCTGTAATGCTTTTTTTCCTTTAAACTTGATTTAAATGGGGGATCAAAAAGACATTTAATGAAAAGAAAAATAAACAGAAGTTCTGGAAATACTGAATAAACTACATATCTACAGCTTAATAATCAAAACGGGCAAAGAGTGTCATTAAGAGCTTGATCCTATTAGTGCTAATTTATATCTAAGGGTTTATTGGATTTGTTCGATCTCCTCATCTCTGTGACTCATCTGGTGCAAAGCAAGGTCAGATCTTCTCTTTTCTCTCTAGCCCTCGCGGACCTTGGCAGACAGAGCATCACAAGTCTTCTTGGCATCTCCCAAAAGCATGGATGTGTTTGGTTTGTAGAAAATAGGGTTGTCCACAGCGGCATAGCCAACTCCCAGAGATCTTTTCATCACGATGACCTGCTTGGACTTCCAGACCTCCAAAACAGGCATGCCAGCAATGATCGAGTTGGGGTCCTCCTGGGCTGCTGAGTTAACTGTGTCATTGGCTCCAATTACCAAAACCAGATCAGTTTCTGAAAAATAGACAGATAATGGAAAGCAAAATTATGGATATCCCAAAAGATGATGGCAAAAGCACCAAAAATGGATATCATACCAGGGAAGTCCTCATTGATTTCGTCCATCTCCAGCACAATATCATATGGCACACCAGCTTCAGCCAACAGTACATTCAGTTGGCCCGGCATACGACCAGCCACAGGGTGGATACCAAACCTGAACAGGCACAAACACACAACACAGATCACTTGACCTCTTGGATTGCCTGATACACACATGGCATCCAAATAAAGCACTTTCCGGCAGTGCAGGTCAGGATGACTTTTCATACAGTACAAGCAGGAGTCTTTGAACACAGTTAAGTAGAAGTGCTTTGGGGTCAGGCTGTTTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU52164 True 2073 lncRNA 0.41 2 7791970 7796624

Neighbor

gene id symbol gene type direction distance location
CI01000006_07731668_07752706 CCDC80L2 coding downstream 37865 7731660 ~ 7754105 (-)
CI01000006_07658119_07685010 NA coding downstream 105801 7657168 ~ 7686169 (-)
CI01000006_07636757_07648169 NA coding downstream 142645 7636693 ~ 7649325 (-)
CI01000006_07586562_07627355 NA coding downstream 163522 7585022 ~ 7628448 (-)
CI01000006_07522441_07525197 NA coding downstream 266157 7521049 ~ 7525813 (-)
CI01000006_07836338_07852081 FGF10A coding upstream 38994 7835618 ~ 7852081 (-)
CI01000006_07879567_07902271 RAI14 coding upstream 82904 7879528 ~ 7902271 (-)
CI01000006_07929484_07931926 NA coding upstream 132593 7929217 ~ 7931926 (-)
CI01000006_07942201_07958652 SLC45A2 coding upstream 145553 7942177 ~ 7958652 (-)
CI01000006_07960990_07974726 AMACR coding upstream 164336 7960960 ~ 7975623 (-)
G45870 NA non-coding downstream 30797 7755114 ~ 7761173 (-)
G45884 NA non-coding downstream 63034 7728393 ~ 7728936 (-)
G45877 NA non-coding downstream 79790 7709119 ~ 7712180 (-)
G45865 NA non-coding downstream 102828 7688754 ~ 7689142 (-)
G45813 NA non-coding downstream 208288 7576909 ~ 7583682 (-)
G45902 NA non-coding upstream 3245 7799869 ~ 7800121 (-)
G45903 NA non-coding upstream 5910 7802534 ~ 7802749 (-)
G45928 NA non-coding upstream 34521 7831145 ~ 7832596 (-)
G45960 NA non-coding upstream 133778 7930402 ~ 7930694 (-)
G45970 NA non-coding upstream 243056 8039680 ~ 8039949 (-)
CI01000006_07500281_07507754 NA other downstream 281014 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 815098 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 3229902 4559509 ~ 4562068 (-)
G43549 NA other downstream 3436542 4352510 ~ 4355428 (-)
G43102 NA other downstream 4857986 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 2686232 10453613 ~ 10484006 (-)
G47658 NA other upstream 3234287 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 3853739 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 4537785 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 4554135 12569205 ~ 12582487 (-)

Expression


Co-expression Network