G39717


Basic Information

Item Value
gene id G39717
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1589162 ~ 1589972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53543
catccatcagttatcaaaccccagaacctactaatctaaccaacacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccacctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccacctgttatcaaaccccagaacctactaatctaaccagc
>TU53544
catccatcagttatcaaaccccagaacctactaatctaaccaacacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccacctgttatcaaaccccagaacctactaatctaaccagc
>TU53545
catccatcagttatcaaaccccagaacctactaatctaaccaacacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccacctgttatcaaaccccagaacctactaatctaaccagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53543 True 299 lncRNA 0.45 3 1589162 1589972
TU53544 False 248 lncRNA 0.45 2 1589162 1589972
TU53545 False 248 lncRNA 0.45 2 1589162 1589613

Neighbor

gene id symbol gene type direction distance location
sdhaf2 sdhaf2,LOC107685224 coding upstream 143939 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 282921 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 394416 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 435874 1123343 ~ 1153288 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding upstream 496995 1082551 ~ 1092167 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding downstream 110865 1700837 ~ 1705998 (+)
LOC103030943 NA coding downstream 219630 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 275420 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 292831 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 528671 2118643 ~ 2235758 (+)
G39704 NA non-coding upstream 129611 1458238 ~ 1459551 (+)
G39698 NA non-coding upstream 159187 1428692 ~ 1429975 (+)
G39676 NA non-coding upstream 237708 1339823 ~ 1351454 (+)
G39662 arih1l,LOC108270676,LOC108439640,LOC107662282,LOC107685205,LOC107738728,LOC107736997,LOC107600711 non-coding upstream 254546 1327223 ~ 1334616 (+)
G39673 NA non-coding upstream 264955 1323881 ~ 1324207 (+)
G39718 NA non-coding downstream 6448 1596420 ~ 1684465 (+)
G39724 NA non-coding downstream 63475 1653447 ~ 1653820 (+)
G39816 NA non-coding downstream 129897 1719869 ~ 1721930 (+)
LOC111192493 NA non-coding downstream 137192 1727164 ~ 1727655 (+)
LOC111192496 NA non-coding downstream 213695 1803667 ~ 1806941 (+)
polr2l NA other upstream 162045 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 175363 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 320777 1265857 ~ 1268385 (+)
G39626 NA other upstream 368676 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 380066 1206787 ~ 1209096 (+)
muc2 LOC108439647 other downstream 171255 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 1007720 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1792670 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 2071703 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 2247535 3837507 ~ 3856474 (+)

Expression


Co-expression Network