G39816


Basic Information

Item Value
gene id G39816
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1719869 ~ 1721930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53682
taaaataatatatttcaccGTTCCtattaaattatgattatttacGTTTATATCTCAcgttttaatacaatataacatataatgaatatattaaaacacacaaattaaaaacctttcgGGCAACAAAAAAACCCCGAACCTAGTTTTGAATGGTCGTGGCTCCACTCCACTGAATCAGTAGCCACAACAAAGACGTCCTTTTCTCCGGGAGCTGCATGGGGACTGCAGGAGTCCAAAGCCTCGCTGTGTTTTATGGGGAACAGTTATTAATATTGGGTCAAATAATCCAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTATTGTgtttTCATTTAAAGCCCCTCAGTCTTAAAACAGCGGCACTAGCGGGCCTCCAGCGGGCCTTCAGCACCGATAGTGATTATTACCCTGCCGGATTAGATTAGAGCAGCGCGGCGGAGCTCTGTAAGTCCCGGTGAGTAATTTAGTTAGCTGACTGTTTTCAGCTCTCGGTGAAGCGCGGTCTTATTATGATACTTAAACGgcgctgggtgtttgttttggtttctgAACGAGCaggtgctgctgcaggtaatcgAGCTAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53682 True 600 lncRNA 0.43 2 1719869 1721930

Neighbor

gene id symbol gene type direction distance location
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 13871 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 274646 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 413628 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 525123 1159772 ~ 1194746 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding upstream 566581 1123343 ~ 1153288 (+)
LOC103030943 NA coding downstream 87672 1809602 ~ 1836384 (+)
slc35c1 slc35c1 coding downstream 143462 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 160873 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 396713 2118643 ~ 2235758 (+)
LOC103031990 NA coding downstream 660123 2382053 ~ 2388088 (+)
G39718 NA non-coding upstream 35404 1596420 ~ 1684465 (+)
G39724 NA non-coding upstream 66049 1653447 ~ 1653820 (+)
G39717 NA non-coding upstream 129897 1589162 ~ 1589972 (+)
G39704 NA non-coding upstream 260318 1458238 ~ 1459551 (+)
G39698 NA non-coding upstream 289894 1428692 ~ 1429975 (+)
LOC111192493 NA non-coding downstream 5234 1727164 ~ 1727655 (+)
LOC111192496 NA non-coding downstream 81737 1803667 ~ 1806941 (+)
G39825 tollip,LOC107675413,LOC107550182 non-coding downstream 117573 1839503 ~ 1841649 (+)
G39838 NA non-coding downstream 135406 1857336 ~ 1891140 (+)
G39826 NA non-coding downstream 189036 1910966 ~ 1952906 (+)
polr2l NA other upstream 292752 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 306070 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 451484 1265857 ~ 1268385 (+)
G39626 NA other upstream 499383 1219806 ~ 1220486 (+)
G39619 mrpl21 other upstream 510773 1206787 ~ 1209096 (+)
muc2 LOC108439647 other downstream 39297 1761227 ~ 1794932 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 875762 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1660712 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1939745 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 2115577 3837507 ~ 3856474 (+)

Expression


Co-expression Network