G39825 (tollip,LOC107675413,LOC107550182)


Basic Information

Item Value
gene id G39825
gene name tollip,LOC107675413,LOC107550182
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1839503 ~ 1841649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53702
TTAATCACAATGGATTTTTacttgtgttttattgtgtgcATTTTTATAACAAATATACTGTTACTGCCCAGATACACAGCTTTACAGATTATTTTCTCAGATAGACTTGCTCAGTACTAAACACATGTGTaagagaaataagaaatatGAAAAGATCATCTTTGCACTCATCCTTGCAGACCTCCAACATGGCCTAAAAAGCCACCGTCACTttgggaaagaaaaagaataagaaccTGCTCTGAGGAAAACCGAAGAGCGAATCACACTTTGAAGGTTTTTACATGCATCCAAGGGATATATGGCAACATCCAGGAGATCAAAAGCATCAATAAACATAATCACTTAGGAACAGTGCAGACCTCTCCATTtatattcatttcatttatattaaaagCAAAGAATTTGCAAGACAGACCAGTTATATAAGTAAAACCTTTGGCATTCTGCGACAGACCAATTTCACATTTGCAAACACAAATGAAGAGGACCTGCGGTTGGTGAACGTCTGGGACAGTCGGGTGGACAGTGTTCACTCATCAGAGAACCTGTTGGTCAGAAAACTGGGAATGGAGGACTGAAGAGTGAAAGTGCTGTTTTATTAAGGTTTATAAGCTGGAATTATCAGTTAGCAAAATTCTCTTAAGACTAAACTCAAGGTAGCAATGAAATAACAGAGGCTTCCCAGCCTTCCATTCTTATAGCTGCTCTGTAAACCTTCTGAATCAGCACAACAGCTTGtttttgtcactgtccaaaaCATTACATGCATCTGTAAAACGGTACCATAGAACAAAAACGTACTTATTTGTTACTGGCAGTCAGTGCAAAAAGATCTGATTTCAGCTGTTTCTGAAGCAtgtctattggtccattcattgtgAAACATTCACGAAGGACTGCTTCTGTGTTTAAATGatgtgaaacaaaacaaaataaataaataaatgctattggacagtgacaatatgcaGCAATTTAATTACAATCTGGTATTTGTTCATATTGTACAAACTGTACTTCAGCAACACTGAACTACTGAAACTCGTGGGCGAAAGGTTTGTAGGATTTCAAGCAAGGCACTATGACTCCTCTCAATAGAAGTGTACTAAACTGAGGTCAGACATGACTGGGGCGGACACTGCGGCTTGTTTACAAATGTGAAATCAGTGTATTTCTTACACGTGTCACACTTAATTACAGATAATCATTAAGACTTCAGTGGGTCGAGCGACAAAGCGGAGAACGAGCCATACAAAAATCATAACGGCTGATAGAAATTCAACATTTAACCAGTAAATCATTGAATGCGTCGGTTTACATTTGCAAATCTGGCGTAACCCACGATATTAGACCCTCGGTAAGATCTGACATACTTTAATATCTCTTTAATTGTTCTCAAAATAATTTACAatccattaaatatatatagagctATATTTATACAGATAAGAGCATATAGATCAACCACACACAGAGACTCACAGGAATACGCATATACAGATCAGACTGGACGGGGTGGAGGGGAATCTCGGTGGAATCGTGGCTACAGCTGCACTCCGACTCGGCCTGAATACACACTCGCTCACAAGTGGCAACAAAATGCGTGtgccgtatatatatatatataatttttttttctcccataaAGAGCATCCAATCACGCAGGAGAACACACACCTAGCCTGAGCCTGTTCCTGCAGGGGACAGGGAGGCATTTCTCAACATTTCTTTTGATTTTCGCAGACAATAAAAAAGCACAGGTGTCGTATGGAATAACCCGGAGGGCTGTCGGGCCTGAGTGAGTGTATTTACAGGACGACGGTGGAGCGCAGGGCGGAGTTACAGCTCCTCCGCCATCTGCAGCAGGGAGTTAATAGCAGCGTCCTTGTTGCCCTGCTGGGCCTCCAACACCGTGCGGATCACTTCTTTATCCAGGTTGGGGAACATGTCCTGAAGAGCCTTCAGGTCCTCCTCGCTGCAGGGGGCGCCGCGAGGTGCGGCTGCAGGCACTGCCGGCATCCCCATCGGTACCACACCCTGGTTATACACACCCGGGACTCCTGGAACAGCAGAACAAGGTTCAGCCAAAAATTTCATTATCACGCGTCCGAACAACTAGCTG

Function

symbol description
tollip Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway. Predicted to be active in cytoplasm. Orthologous to human TOLLIP (toll interacting protein).

NR:

description
toll-interacting protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53702 True 2125 lncRNA 0.42 2 1839503 1841649

Neighbor

gene id symbol gene type direction distance location
LOC103030943 NA coding upstream 3119 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 133505 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 394280 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 533262 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 644757 1159772 ~ 1194746 (+)
slc35c1 slc35c1 coding downstream 23743 1865392 ~ 1871930 (+)
mapk8ip1 mapk8ip1 coding downstream 41154 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 276994 2118643 ~ 2235758 (+)
LOC103031990 NA coding downstream 540404 2382053 ~ 2388088 (+)
LOC103032316 LOC108412978 coding downstream 550466 2392115 ~ 2406388 (+)
LOC111192496 NA non-coding upstream 32562 1803667 ~ 1806941 (+)
LOC111192493 NA non-coding upstream 111848 1727164 ~ 1727655 (+)
G39816 NA non-coding upstream 117573 1719869 ~ 1721930 (+)
G39718 NA non-coding upstream 155038 1596420 ~ 1684465 (+)
G39724 NA non-coding upstream 185683 1653447 ~ 1653820 (+)
G39838 NA non-coding downstream 15687 1857336 ~ 1891140 (+)
G39826 NA non-coding downstream 69317 1910966 ~ 1952906 (+)
G39846 NA non-coding downstream 87301 1928950 ~ 1970208 (+)
G39847 NA non-coding downstream 89544 1931193 ~ 1932060 (+)
G39848 NA non-coding downstream 90497 1932146 ~ 1932812 (+)
muc2 LOC108439647 other upstream 44571 1761227 ~ 1794932 (+)
polr2l NA other upstream 412386 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 425704 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 571118 1265857 ~ 1268385 (+)
G39626 NA other upstream 619017 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 756043 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1540993 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1820026 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1995858 3837507 ~ 3856474 (+)
G40318 NA other downstream 2292861 4134510 ~ 4135585 (+)

Expression


Co-expression Network