G39847


Basic Information

Item Value
gene id G39847
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1931193 ~ 1932060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53750
TATCTAAAAAATAGGGtattttttctcactttctcagTTTTAGTGAAGTCTGGTGAAATTCTTGTATAGAAATAGACGGAGAAACCTCCGGCAATAACCCAGTCCGTCTGGTACTGTCTTAAGAGCACTCAGTGACCTGCTGAGGAATTATAAACAACCTAATTACAGCAGTGAACAGTATGCATTGTTCTGAATGAAACAGACTCAGGGTAGGTAGGGTAGTTTTAGGTTGTGAGCTGAACAGTCATAAAGCGTCTACCTTGAGACGTCTGAAACAGAAGCCAAGTGTGCTAATCTGTCTAATAACCTGTGAAATAATAATTAGACTAGACTGGTTAAATTGGGCTGAATAATagtctttattatattttacacagacaGAAAAGCTTTTAGCTCGCACAcctgttacagtgtgtgtgtgtgtgcgtgcatgatGACGCTAAAGTTGCCTCGTTGTCACACACCCACACGAATCACTTTTCAACGTCAAAGATACTGTTGCCATGGGGATGGACCACAGTCTCCATCACTGATGGCACCAATCAGAGTGAGTCAGCTCAGAGTGAGGGGGCAGgcgcacacatatatacacacacacacacacacacacacacactaaccctaTCCTGTGACTGGAGTGAACTATTACCATAATcaacatatcatatcaaaccaTAAACCTAtttaatctaaccagcacagcaccatccatctgttatcaaaccccagatcctactaatctaaccagcacagcaccatccatctgttatcaaaccccagaacctactaatctaaccagcacagcaccatccatctgttatcaaaccccagatcctactaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
ko04022 cGMP-PKG signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU53750 True 841 lncRNA 0.42 2 1931193 1932060

Neighbor

gene id symbol gene type direction distance location
slc35c1 slc35c1 coding upstream 59263 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 94809 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 225195 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 485970 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 624952 1292789 ~ 1306241 (+)
LOC111192498 lrp4 coding downstream 186583 2118643 ~ 2235758 (+)
LOC103031990 NA coding downstream 449993 2382053 ~ 2388088 (+)
LOC103032316 LOC108412978 coding downstream 460055 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 868958 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 1054305 2986365 ~ 3006325 (+)
G39838 NA non-coding upstream 40053 1857336 ~ 1891140 (+)
G39825 tollip,LOC107675413,LOC107550182 non-coding upstream 89544 1839503 ~ 1841649 (+)
LOC111192496 NA non-coding upstream 124252 1803667 ~ 1806941 (+)
LOC111192493 NA non-coding upstream 203538 1727164 ~ 1727655 (+)
G39816 NA non-coding upstream 209263 1719869 ~ 1721930 (+)
G39848 NA non-coding downstream 86 1932146 ~ 1932812 (+)
G39914 NA non-coding downstream 90123 2022183 ~ 2022598 (+)
G39922 NA non-coding downstream 138039 2070099 ~ 2078006 (+)
G39927 NA non-coding downstream 196850 2128910 ~ 2131518 (+)
G39928 NA non-coding downstream 198914 2130974 ~ 2131935 (+)
muc2 LOC108439647 other upstream 136261 1761227 ~ 1794932 (+)
polr2l NA other upstream 504076 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 517394 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 662808 1265857 ~ 1268385 (+)
G39626 NA other upstream 710707 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 665632 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1450582 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1729615 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1905447 3837507 ~ 3856474 (+)
G40318 NA other downstream 2202450 4134510 ~ 4135585 (+)

Expression


Co-expression Network