G39930


Basic Information

Item Value
gene id G39930
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2215968 ~ 2216663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53885
taatactttttttctggttatttaatttacacaccattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgttttatttcatgatgtctcttaatattaaacttttagactctttggcccgttttctgcgctagaaatgcgcaccctctcctcttttagactctttggtccgtttttctgagctagaaatgcgcaccctctctgcttttagactctttggcctgattttccgCAATAAAAAtttgcaccctctccgcttttagactcttttgcctcgtttttctgcactagaaatgcgcatcctctccgcttttagactctttgacccgtttttctgcgataGAAacgcgcatcctctccgcttttagactctttgacccgtttttctgcgataGAAacgcgcatcctctccgcttttagactctttggcccgtttctgacacctaacgttcaaactttgaatctcatattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccacaAAGGGAAACGGGccgcaggccgtagtttggacacccctgtcctaGATCCTCTGTAGAATTTTTCAGTTCATTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53885 True 644 lncRNA 0.41 2 2215968 2216663

Neighbor

gene id symbol gene type direction distance location
mapk8ip1 mapk8ip1 coding upstream 267546 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 344038 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 379584 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 509970 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 770745 1440755 ~ 1445223 (+)
LOC103031990 NA coding downstream 165390 2382053 ~ 2388088 (+)
LOC103032316 LOC108412978 coding downstream 175452 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 584355 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 769702 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 791671 3008334 ~ 3042100 (+)
G39929 NA non-coding upstream 11010 2204523 ~ 2204958 (+)
G39928 NA non-coding upstream 84033 2130974 ~ 2131935 (+)
G39927 NA non-coding upstream 84450 2128910 ~ 2131518 (+)
G39922 NA non-coding upstream 137962 2070099 ~ 2078006 (+)
G39914 NA non-coding upstream 193370 2022183 ~ 2022598 (+)
G39942 NA non-coding downstream 160843 2377506 ~ 2377822 (+)
G39945 NA non-coding downstream 172375 2389038 ~ 2390639 (+)
G39946 NA non-coding downstream 173253 2389916 ~ 2391562 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding downstream 198109 2414772 ~ 2419056 (+)
G39943 NA non-coding downstream 202487 2419150 ~ 2425105 (+)
muc2 LOC108439647 other upstream 421036 1761227 ~ 1794932 (+)
polr2l NA other upstream 788851 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 802169 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 947583 1265857 ~ 1268385 (+)
G39626 NA other upstream 995482 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 381029 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1165979 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1445012 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1620844 3837507 ~ 3856474 (+)
G40318 NA other downstream 1917847 4134510 ~ 4135585 (+)

Expression


Co-expression Network