G39946


Basic Information

Item Value
gene id G39946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2389916 ~ 2391562 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU53906
gcattctggatcatttggagtggttttactacgcaagccgggaggccagttagcagggcattgcagtagtcgaggcgtgagatgacgactgcttgtaccaggagttgggtggcctgttgcgtcagaaactgtctaattttcctgatgttataaagcgcgaagcggcaggatcgagcaaccgaggccacatggtgcgtgaaggagagctggtcatcaaccataacacccaggttcctagcaacctttgtcggtgagagagagagagagagtcgatgcttatagagaggttgtgttgaaaagatggttttgctggtatgaccagaagttcagtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53906 True 332 lncRNA 0.51 2 2389916 2391562

Neighbor

gene id symbol gene type direction distance location
LOC103031990 NA coding upstream 1828 2382053 ~ 2388088 (+)
LOC111192498 lrp4 coding upstream 154158 2118643 ~ 2235758 (+)
mapk8ip1 mapk8ip1 coding upstream 441494 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 517986 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 553532 1809602 ~ 1836384 (+)
LOC103032316 LOC108412978 coding downstream 553 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 409456 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 594803 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 616772 3008334 ~ 3042100 (+)
arnt2 arnt2 coding downstream 731030 3122592 ~ 3277613 (+)
G39942 NA non-coding upstream 12094 2377506 ~ 2377822 (+)
G39930 NA non-coding upstream 173253 2215968 ~ 2216663 (+)
G39929 NA non-coding upstream 184958 2204523 ~ 2204958 (+)
G39928 NA non-coding upstream 257981 2130974 ~ 2131935 (+)
G39927 NA non-coding upstream 258398 2128910 ~ 2131518 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding downstream 23210 2414772 ~ 2419056 (+)
G39943 NA non-coding downstream 27588 2419150 ~ 2425105 (+)
G39965 NA non-coding downstream 107307 2498869 ~ 2499291 (+)
LOC111192560 NA non-coding downstream 400972 2792534 ~ 2793815 (+)
G40014 NA non-coding downstream 415588 2807150 ~ 2810533 (+)
muc2 LOC108439647 other upstream 594984 1761227 ~ 1794932 (+)
polr2l NA other upstream 962799 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 976117 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1121531 1265857 ~ 1268385 (+)
G39626 NA other upstream 1169430 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 206130 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 991080 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1270113 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1445945 3837507 ~ 3856474 (+)
G40318 NA other downstream 1742948 4134510 ~ 4135585 (+)

Expression


Co-expression Network