G40018


Basic Information

Item Value
gene id G40018
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2832705 ~ 2835026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54005
ACAGATCAACTATGTGTAGAGGAGCTTTAATGTATCCTGACCCTACACCCTTACATACAGCATATGCACCACAGAATGACTGAGCTGAAAAAGGTAAACAACTGGATAAGATGAGAGACTGTGCCGCCCCAGTATCCCTTAATATACTGACTGAAGCTGCAGCACCACCATGCCCCAAACTGACATTTCCTCTTGACATAAAAGGCTTAAAAGAAGAATCAAACACATTGCATAGGGCAATCAGACAGTCAGTACATTACACAATCCACAAAACCAACACTTTTAGCTGAACCACCAGCTTGCGGCTTATTCGGTCTCTCCAACTTTCTTTTCAGCGCTAAACAGTCACCAGCTATATGGCCAACTTTGTGACAGTAATAACATTCACGGGCACTAAAGGAACGTGGTGGGGAACCACCACCATGAGAATTCTTTACACTACTTCCTGAAGTACTCTCTATCTTAACTACAGGAGACCTAAAGGTTTGCCTGTGCGTGAGTACAAACTCATCAGCCTGCACGGCTGCTTGGGACACACTAACAGCAGAGCGTTCATTCAAATAAGTCACAACACGTTCTGGCAAACAGTTCTTGAACTCTTCTAAAAGAATAAGTTCACGGAGCGACTCAAAATCATTCACCTTATTTGCGCTACACCACTTATCAAAAAGAACTCCTTTCTCCCTCACAAACTCAACGTGAGTTTGGGCTGACTGCTTCCTTAGATTCCTAAACCGCTGACGGTATGCTTCTGGCACTAACTCATAAGCGCGTAAAATAGCAGACTTAACAACATCATATTGCAAGCTATCCTGAAGTGATAAAGCAGAACACACTTCCTGTGCCTTGCCCACTAGCTTACATTGCAAAAGAACAGGCCAGATATCCTTTGGCCAAGCCAAAGTTGCTGCTAATCTTTCAAACACGCTAAAATAGGTGTCCACTTCAGCTTCTCTAAACACAGGCACCAAAGAGATATATTTAGACACGTCACAGGAGGAAGTGTGAGGCACAACTGGGACAACTACTGGCGACTCAGACCCACCACTAGATGGCACTGCGACAGGTGGAACAGGAGTGGCAGAAGACATCCACTTAGGTTGAACTGAGGTGATCTCCAACGCCTTCAGCTCTAACTCTCGCAGACGTTATTATCCGCTCAGACTCCAACTCAAGTTTACGCACCGCTAGCTCAAACTCAAACTTGCGCACCTCAGCACGCTCCTTAGCATCAAACTCAAGTCTGGCTAGGCGTAACTTAAAAGGCTCCTCAGCCAAAGACTGAGGAGACTCTGTATAACCAGGTGAGACAGGATCAAAGTGAGGTAAAACATTTCTTACCTCAGTCTCCACAACTGGCACCACCACTGTCGTCTCCGGCCCATCCGAACTATCCACAGCTTCCGCCGGTGTGGAAGTACTCTCCTCAGGAACAGCACTCTCCACAAGTGGGGAAGGAACACCACACGTAGTATCTACCACTGGTTGCACACTCAACACACCAACTGCAACTAAATGATCAAAAACCAAGTTATATATGTCCTTCTTTAACATAGCCCGTGTTGTGGGAAGCTTAAAGTGGTCAGCTATTAAAATCAGGTCATCCTTCTTACAACATTGTAGCGCTTCACAACTAGGTGActcaaaaaaacattgcagATCAAACGAAGCCATTTTTACAAGTAATGAGCGACAATTAACCAAATTCTAAACACTAGCAACTACTACCAACCAAAATTGTTTCCACAACCACCATCATCACATGCTCAACACCCACTAGTGGGGTAGGCGGGACCAGTAATtatcccggacgagcccccaATTGTTATGCTCCTCCCCTTTTGTCTAGGGGTGAGGAGGAGTAACAAAATGGCATGTGGTAGTGGAGGAAGTGGAAAGACAACAATTGGtggtaaaacaaaaatgtttattacagaAATCAAAGgggtacaaaaatatatagatagaaataaataaactgaagcTtaagagaaaataaatcaacagaAACTGTAGTCTAAAGGTGGACTAAGGACGGTGCCAacgaaaagaaaataataaaacaaaactaaactgcctaaccaaaaactaaactaaccaAAATACAAAAGTAGCACCCGCCCCTAACCTAGTGTATCTAAACAAATATTGCTCCTTTGGCGTTATGTTGTATGTAGGGCGCCCATCTTACCTGTCCACACAGTAGACAAACAGAAGTGAGGTGGAGTAATTAATGTGCTCAAACAATGTGAGTTGTTACCAAAGTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54005 True 2270 lncRNA 0.44 2 2832705 2835026

Neighbor

gene id symbol gene type direction distance location
LOC103032316 LOC108412978 coding upstream 426317 2392115 ~ 2406388 (+)
LOC103031990 NA coding upstream 444617 2382053 ~ 2388088 (+)
LOC111192498 lrp4 coding upstream 596947 2118643 ~ 2235758 (+)
mapk8ip1 mapk8ip1 coding upstream 884283 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 960775 1865392 ~ 1871930 (+)
zfand6 NA coding downstream 151339 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 173308 3008334 ~ 3042100 (+)
arnt2 arnt2 coding downstream 287566 3122592 ~ 3277613 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 594456 3429482 ~ 3645688 (+)
il16 il16 coding downstream 855692 3690718 ~ 3750084 (+)
G40014 NA non-coding upstream 22172 2807150 ~ 2810533 (+)
LOC111192560 NA non-coding upstream 38890 2792534 ~ 2793815 (+)
G39965 NA non-coding upstream 333414 2498869 ~ 2499291 (+)
G39943 NA non-coding upstream 407600 2419150 ~ 2425105 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding upstream 413649 2414772 ~ 2419056 (+)
G40030 NA non-coding downstream 124832 2959858 ~ 3003170 (+)
G40035 NA non-coding downstream 207378 3042404 ~ 3042631 (+)
G40095 NA non-coding downstream 434229 3269255 ~ 3270205 (+)
G40093 NA non-coding downstream 442653 3277679 ~ 3278297 (+)
G40113 NA non-coding downstream 548286 3383312 ~ 3427487 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 21209 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 1037773 1761227 ~ 1794932 (+)
polr2l NA other upstream 1405588 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 1418906 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1564320 1265857 ~ 1268385 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 547616 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 826649 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1002481 3837507 ~ 3856474 (+)
G40318 NA other downstream 1299484 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 1669371 4504397 ~ 4515611 (+)

Expression


Co-expression Network