G40035


Basic Information

Item Value
gene id G40035
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3042404 ~ 3042631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54026
GGAAAGCacatgctaactttagcggtgagttagctaacgttaccagaaagagaactaaggttaacaacGAGCTAACTCACATTGGcagggagctagctaacatactaacattagcagagagttatctagctacattactgggaagagaatttaggttagcggagagctagctaacatgctaacataataacattagcagcgagttagctacgttaccgggaagagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54026 True 228 lncRNA 0.42 1 3042404 3042631

Neighbor

gene id symbol gene type direction distance location
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 304 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 36079 2986365 ~ 3006325 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding upstream 181021 2801018 ~ 2861383 (+)
LOC103032316 LOC108412978 coding upstream 636016 2392115 ~ 2406388 (+)
LOC103031990 NA coding upstream 654316 2382053 ~ 2388088 (+)
arnt2 arnt2 coding downstream 79961 3122592 ~ 3277613 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 386851 3429482 ~ 3645688 (+)
il16 il16 coding downstream 648087 3690718 ~ 3750084 (+)
LOC103021590 NA coding downstream 1087991 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 1391921 4434552 ~ 4490598 (+)
G40030 NA non-coding upstream 39234 2959858 ~ 3003170 (+)
G40018 NA non-coding upstream 207378 2832705 ~ 2835026 (+)
G40014 NA non-coding upstream 231871 2807150 ~ 2810533 (+)
LOC111192560 NA non-coding upstream 248589 2792534 ~ 2793815 (+)
G39965 NA non-coding upstream 543113 2498869 ~ 2499291 (+)
G40095 NA non-coding downstream 226624 3269255 ~ 3270205 (+)
G40093 NA non-coding downstream 235048 3277679 ~ 3278297 (+)
G40113 NA non-coding downstream 340681 3383312 ~ 3427487 (+)
G40112 NA non-coding downstream 356885 3399516 ~ 3487173 (+)
G40127 NA non-coding downstream 397259 3439890 ~ 3440612 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 230908 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 1247472 1761227 ~ 1794932 (+)
polr2l NA other upstream 1615287 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 1628605 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1774019 1265857 ~ 1268385 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 340011 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 619044 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 794876 3837507 ~ 3856474 (+)
G40318 NA other downstream 1091879 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 1461766 4504397 ~ 4515611 (+)

Expression


Co-expression Network