G45265


Basic Information

Item Value
gene id G45265
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7883867 ~ 7920355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU51448
AATCTGCTTCAGATCTTCAATGGTCTCGAGCAGCATGCTCTTTTCCTCGTGCAATTTCTCGATCTCATCCTTCAGTACAGCACTTTTCAGCTCCTCCTCCTTGTAATTGAATCTTTTGGATGAATCACTTTTGCTGGACAAAGGAGTATCAGTTGGAGTAAAATAAGGTGGTGAGATGATACCAGCCGACTGGATTGGGCTAATGGGAGGAGGAGGAGGTGCTTTTCTCTTTTTGGGAGTGGAGCTTCTGTCCTCATTTAACTTTTGACCATGCTGAGGGGTTCTCGTCGAACTCTTATCTGACTCTGACTGCTGTCTCTGGAGGGCCGTGTTAAGAACGGTTCGGACCTCGCTGCTGCCCGACAATTTGGCATAATGGAGCACGTCGTGGCCGAGCGAGTCCACCATGTGCAGGTCAGCTCCCCTCTGCACCAGCAGCTCTACAGCGGCTGGACAGCTGCTCTCACTGGCCAACATCACTGCGGTCCTGCCATTTTTGTCTCTAGCGTTGATGTCAGCACCCCAATCCAATAAACTCCGGCAGACCTCTGCGTGTGCATGTCTACCTGACAAAAGCAGGGGCGTCAAGCCGTCCGAGTCCTTAAGATTGACGTGACACTTGTGCTCACACAGAAGCTGAACTATCACAGTGTTTCCGCTGGCAGCTGCATGATGAAGAGCCATCTTCCCTGAGCTGTCAGGGGCATCCACCACACACTTAGTCTGAAGCAACTTTTTGGCACACTCAGGATGGTTGTTTTTGGCAGCAAGGTGTAAAGCAGTAAACCCTGAAGCGTCCTGCAGAGAAACATCAGCCCCATGAGCCAAGATGACAGCAAGGCACTCAGCTTGACCTTGTGCAGCTGCTACATGCAGAGCAGACTTGCCCTCGCTGTCAAGCTTGGTAGGACAGGCTCCTTTCTTCGACAGGAGGGAGGTGACTTTATCTGCCTCTCCATGCTCCACTGCACTGAGGAGACGCTCATCATTCTTGTTCCATTCATGGGCATCACTCTTCCTAAATTTTGCCTTCAGGCTCTTCATATTAGTCCATTCAGATTCCAACAGATCCCAAGACACCGACAACAATCCATTCAAGTGGCGCTCGCGCTGCCTCTGATTGTTC
>TU51444
TTCAGGCTTTCCTCAGTGTATCCCAGTGTATATTTTACATTCAACAACAGCTGCCTCGTGCTTAAAGCCAAATCATAACTGCACTGATGTGATATTCAGCACAACAGCACAAATAAAGATGCTATTGCTATTAATCATAATCTGAAATGACATCTTCACAGCTAAACTGCCATCACACTGACATTCACTTTTAAATTACCTGACTCTGACTGCTGTCTCTGGAGGGCCGTGTTAAGAACGGTTCGGACCTCGCTGCTGCCCGACAATTTGGCATAATGGAGCACGTCGTGGCCGAGCGAGTCCACCATGTGCAGGTCAGCTCCCCTCTGCACCAGCAGCTCTACAGCGGCTGGACAGCTGCTCTCACTGGCCAACATCACTGCGGTCCTGGCCATTTTTGTCTCTAGCGTTGATGTCAGCACCCCAATCCAATAAACTCCGGCAGACCTCTGCGTGTGCATGTCTACCTGACAAAAGCAGGGGCGTCAAGCCGTCCTAAATGGAAAAAGAGCTTTAAGTCAACATCATTTTTCTTCAAATACAATCCTCTGCATATTAAGAGGCTACGTAGACATTAAACAGAACTGGCACCAAACAGTGAGACAGTGTGAAAAGGCACTGAATTATCATTAAAATGTAATAGAGCTTCAGACAACTAATATCAACAGAAGAAAAACCTGATGCATTAAACTCTACATGATATTAAAGTACACAAGTCAACTTTGTCCCCCATCTTTTCTAAATTTCCTTAGGCAAACAATCCTCTCACTGAGCTCAATTGCTCCTGCCAGCGACGCCAGGGGTCACAGGGGGTTCT
>TU51447
CTGAATCACATCTGGTGGCAGGAAGCTCCTCTGAGGGGTGTTTTTTCGTTCTTTCTTTGGGAGTGCAGAAGTTCTGTGCCTTAAATTTATACTCCCAGTTATGACTCAGTCTTCATAATAAAGCTGCAGACATGTCTGATTCTGAGTCATTCACTCATCATGCAGTCTAGAACATTCACAGAAGCTGACCATGAAACTTTGCCTCAGATTCCAACTGAATGAAAATATAGACTATAACTATAAATGTCATACGTGAGAATATGGTGTTAAATCAGTGTTTTGTTTCATGGAGGGACTGTTCATGCGATTCTCAATACAAGAGTTCAAGACCAACACAACGCCATTCAGTTCCCAAACCAGCTGAAAGTACACTAGGTCATACTTACATCACTCTTCCTAAATTTTGCCTTCAGGCTCTTCATATTAGTCCATTCAGATTCCAACAGATCCCAAGACACCGACAACAATCCATTCAAGTGGCGCTCGCGCTGCCTCTGATTGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU51448 False 1126 TUCP 0.51 13 7883867 7920355
TU51444 False 817 lncRNA 0.45 2 7885652 7887115
TU51447 True 504 lncRNA 0.41 2 7919035 7920355

Neighbor

gene id symbol gene type direction distance location
CI01000006_07757777_07795187 NNT.L, NNT coding upstream 90394 7757526 ~ 7795258 (+)
CI01000006_07699736_07726659 MFHAS1 coding upstream 158655 7699736 ~ 7726997 (+)
CI01000006_07694812_07698078 ERI1 coding upstream 187218 7694812 ~ 7698434 (+)
CI01000006_07692311_07693192 PPP1R3B coding upstream 191535 7692240 ~ 7694117 (+)
CI01000006_07577082_07582303 DUSP4 coding upstream 303339 7576398 ~ 7582313 (+)
CI01000006_07939608_07940846 RXFP3 coding downstream 18963 7939318 ~ 7941415 (+)
CI01000006_08025159_08032131 NA coding downstream 104804 8025159 ~ 8032623 (+)
CI01000006_08108713_08122179 NA coding downstream 188208 8108563 ~ 8122364 (+)
CI01000006_08184916_08188512 NEFMA coding downstream 264444 8184799 ~ 8189299 (+)
CI01000006_08198328_08199463 NA coding downstream 277842 8197881 ~ 8200145 (+)
G45249 NA non-coding upstream 54245 7831162 ~ 7831407 (+)
G45244 NA non-coding upstream 65918 7819113 ~ 7819734 (+)
G45201 NA non-coding upstream 136693 7734809 ~ 7748959 (+)
G45233 NA non-coding upstream 199476 7685958 ~ 7686176 (+)
G45178 NA non-coding upstream 201981 7607604 ~ 7683671 (+)
G45297 NA non-coding downstream 25902 7946257 ~ 7946975 (+)
G45303 NA non-coding downstream 34691 7955046 ~ 7955249 (+)
G45308 NA non-coding downstream 50677 7971032 ~ 7971805 (+)
G45322 NA non-coding downstream 72278 7992633 ~ 7992865 (+)
G45325 NA non-coding downstream 73497 7993852 ~ 7994217 (+)
G44872 NA other upstream 497768 7356352 ~ 7387884 (+)
CI01000006_07167131_07168925 NA other upstream 715118 7166778 ~ 7168925 (+)
CI01000006_06122278_06122736 NA other upstream 1756977 6122035 ~ 6122751 (+)
CI01000006_06104927_06109730 NA other upstream 1776064 6104927 ~ 6109820 (+)
G45336 NA other downstream 98987 8019342 ~ 8021951 (+)
G45355 NA other downstream 289200 8209555 ~ 8212388 (+)
G45416 NA other downstream 898459 8818814 ~ 8834697 (+)
G46652 NA other downstream 2236224 10156579 ~ 10159251 (+)

Expression


Co-expression Network