G40093


Basic Information

Item Value
gene id G40093
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3277679 ~ 3278297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54107
ttttttttttttttttttttgcgaaccGTTCAGGCTTCAAGTGCTCTTCATTAACAAAAGCTAAGCTATCATCACCAGCCTCGTGGCAGCAGCATTGGCAGCAGCATTGGCAGCAGCAGTGAAGGGGTAGAGCATTGCGGTGTGTGATCTGTTGATCTGTCATAGACTTTGTAATCCTttgaattctatttttttgtttttttggaactAACGACGAGGACTTTTGAGGTCTAGATCTTTTACACGATTAAGAAACGGTGTATCGAAATGAAGGACTGATAGGAAAACTTAAAGACTTAAAACGAATGAAGAAAACCCCTTTTTGCTAAATCGACGTGgatgttttaatgtaaataatgtgatttttatgtGGGATGGTGTGTTTCGTCGTcgtcgtcttcttcttcttcttcttgttttcaCCTCCGCCGCGACATGCGTCCTTGTGTAGGTTTAATATCGTCCATGGTGTGCAATGTGGGTACGTATTTAACTCTGGGTATTTAGTTAGCCTGTTAACTGTACGATGAGTTTAGACTTGTATAAATCGTGTACATGTGTTCCATTATTTTTGTGATGACAGACAGTGCTCGTGACAATAAACTCTCATCCAATCAAA
>TU54108
ttttttttttttttttttttgcgaaccGTTCAGGCTTCAAGTGCTCTTCATTAACAAAAGCTAAGCTATCATCACCAGCCTCGTGGCAGCAGCATTGGCAGCAGCATTGGCAGCAGCAGTGAAGGGGTAGAGCATTGCGGTGTGTGATCTGTTGATCTGTCATAGACTTTGTAATCCTttgaattctatttttttgtttttttggaactAACGACGAGGACTTTTGAGGTCTAGATCTTTTACACGATTAAGAAACGGTGTATCGAAATGAAGGACTGATAGGAAAACTTAAAGACTTAAAACGAATGAAGAAAACCCCTTTTTGCTAAATCGACGTGgatgttttaatgtaaataatgtgatttttatgtGGGATGGTGTGTTTCGTCGTcgtcgtcttcttcttcttcttcttgttttcaCCTCCGCCGCGACATGCGTCCTTGTGTAGGTTTAATATCGTCCATGGTGTGCAATGTGGGTACGTATTTAACTCTGGGTATTTAGTTAGCCTGTTAACTGTACGATGAGTTTAGACTTGTATAAATCGTGTACATGTGTTCCATTATTTTTGTGATGACAGACAGTGCTCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54107 True 619 lncRNA 0.39 1 3277679 3278297
TU54108 False 595 lncRNA 0.39 1 3277679 3278273

Neighbor

gene id symbol gene type direction distance location
arnt2 arnt2 coding upstream 66 3122592 ~ 3277613 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 235579 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 271354 2986365 ~ 3006325 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding upstream 416296 2801018 ~ 2861383 (+)
LOC103032316 LOC108412978 coding upstream 871291 2392115 ~ 2406388 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 151185 3429482 ~ 3645688 (+)
il16 il16 coding downstream 412421 3690718 ~ 3750084 (+)
LOC103021590 NA coding downstream 852325 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 1156255 4434552 ~ 4490598 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 1256937 4535234 ~ 4744552 (+)
G40095 NA non-coding upstream 7474 3269255 ~ 3270205 (+)
G40035 NA non-coding upstream 235048 3042404 ~ 3042631 (+)
G40030 NA non-coding upstream 274509 2959858 ~ 3003170 (+)
G40018 NA non-coding upstream 442653 2832705 ~ 2835026 (+)
G40014 NA non-coding upstream 467146 2807150 ~ 2810533 (+)
G40113 NA non-coding downstream 105015 3383312 ~ 3427487 (+)
G40112 NA non-coding downstream 121219 3399516 ~ 3487173 (+)
G40127 NA non-coding downstream 161593 3439890 ~ 3440612 (+)
G40186 NA non-coding downstream 376503 3654800 ~ 3655382 (+)
G40187 mesdc2,LOC106562689,LOC107553745 non-coding downstream 377413 3655710 ~ 3657053 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 466183 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 1482747 1761227 ~ 1794932 (+)
polr2l NA other upstream 1850562 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 1863880 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 2009294 1265857 ~ 1268385 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 104345 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 383378 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 559210 3837507 ~ 3856474 (+)
G40318 NA other downstream 856213 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 1226100 4504397 ~ 4515611 (+)

Expression


Co-expression Network