G40194 (stard5)


Basic Information

Item Value
gene id G40194
gene name stard5
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3760161 ~ 3763427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54233
ATTTGACGTAACTGTGCCGTCTTCATACTGCTTAGCTAAAATAACATCCACAAAGTCCCGCGGTGATATAATGCCCATAGCAGCAGAGGGAGTGACAGTTCTGCACACCGTTACGTcTGAAGAAACTTGTTCAAGCAGCTCAAACTTCTTCACATTGTTGTCCCATTTCACACGAAGCCCGTTGGGGTCCGGTTTCAGGCATTCCCACACTTTCTGCGGACTGCCATTCACTATCCCCTCTCCTTTATACACGTTTCCAGTAAACTCGGCCGATGGTCTCCAGTACACCACAACTTCACTCGTTTTCTTGCAGCTTTTCCAGCCGGACTGGTCTCTGCTGTAGCCCAGAAGCAGCTCCGCCACCCAGTTCGCCTTCTCCTCATAATCCATTACAGCTCTGAACCAGATCCTCCAGTACTACACAGCAGATGTCagtgcaccacacacacacacacacacacaagcacactaAACTACTGCGAAACCCCTAATGGGAGCTCACCACTCATTCATTCCAGTTCAGCTGCTGTGATCACTAGTCCAGATCTCCTGTTCCAGAAGCTGATCAGGACGGTCGATCACTGACACGCTGATAATCCTGTAAAAGATCTCCAGCAGGATCACAGAGAACCTCACTGTCCTGCTCTGCTTTCTCTCCCT

Function

symbol description
stard5 Predicted to enable bile acid binding activity and lipid binding activity. Predicted to act upstream of or within lipid transport. Orthologous to human STARD5 (StAR related lipid transfer domain containing 5).

NR:

description
PREDICTED: stAR-related lipid transfer protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54233 True 660 lncRNA 0.50 4 3760161 3763427

Neighbor

gene id symbol gene type direction distance location
il16 il16 coding upstream 10077 3690718 ~ 3750084 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 114473 3429482 ~ 3645688 (+)
arnt2 arnt2 coding upstream 482548 3122592 ~ 3277613 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 718061 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 753836 2986365 ~ 3006325 (+)
LOC103021590 NA coding downstream 367195 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 671125 4434552 ~ 4490598 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 771807 4535234 ~ 4744552 (+)
efl1 efl1 coding downstream 998766 4762193 ~ 4933029 (+)
mex3b mex3b,LOC107736985,LOC107685193,LOC107709501,LOC107553747,LOC107662268 coding downstream 1238338 5001765 ~ 5006585 (+)
G40187 mesdc2,LOC106562689,LOC107553745 non-coding upstream 103108 3655710 ~ 3657053 (+)
G40186 NA non-coding upstream 104779 3654800 ~ 3655382 (+)
G40112 NA non-coding upstream 272988 3399516 ~ 3487173 (+)
G40127 NA non-coding upstream 319549 3439890 ~ 3440612 (+)
G40113 NA non-coding upstream 332674 3383312 ~ 3427487 (+)
G40274 NA non-coding downstream 111996 3875423 ~ 3875630 (+)
G40275 NA non-coding downstream 128205 3891632 ~ 3891893 (+)
G40287 NA non-coding downstream 137629 3901056 ~ 3933592 (+)
G40291 NA non-coding downstream 170692 3934119 ~ 3934377 (+)
G40293 NA non-coding downstream 182149 3945576 ~ 3945775 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other upstream 76977 3661675 ~ 3683184 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 358223 3382642 ~ 3401938 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 948665 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 1965229 1761227 ~ 1794932 (+)
polr2l NA other upstream 2333044 1420391 ~ 1427117 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 74080 3837507 ~ 3856474 (+)
G40318 NA other downstream 371083 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 740970 4504397 ~ 4515611 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other downstream 1542260 5305687 ~ 5312344 (+)
G40756 NA other downstream 2769938 6533365 ~ 6533674 (+)

Expression


Co-expression Network