G40298


Basic Information

Item Value
gene id G40298
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3987512 ~ 3988367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54353
aaccataaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctgaaatctaaccctacacctaacccaaaccctaacctttaatcgaccctaaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatcaaaccctacacctaaccctaacccttaatcaaccctaaaatcaaaccctacacctaaccctaaccttaaccatgaattaaccctaaaatctaaccctacacctaactccaaccctaaccttaacttaaacttaaaatcgaaccctaaacccaatcctaaaatactAAGATAAGGGTTT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU54353 True 334 lncRNA 0.38 3 3987512 3988367

Neighbor

gene id symbol gene type direction distance location
il16 il16 coding upstream 237428 3690718 ~ 3750084 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 341824 3429482 ~ 3645688 (+)
arnt2 arnt2 coding upstream 709899 3122592 ~ 3277613 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 945412 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 981187 2986365 ~ 3006325 (+)
LOC103021590 NA coding downstream 142255 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 446185 4434552 ~ 4490598 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 546867 4535234 ~ 4744552 (+)
efl1 efl1 coding downstream 773826 4762193 ~ 4933029 (+)
mex3b mex3b,LOC107736985,LOC107685193,LOC107709501,LOC107553747,LOC107662268 coding downstream 1013398 5001765 ~ 5006585 (+)
G40294 NA non-coding upstream 8399 3978885 ~ 3979113 (+)
G40293 NA non-coding upstream 41737 3945576 ~ 3945775 (+)
G40291 NA non-coding upstream 53135 3934119 ~ 3934377 (+)
G40287 NA non-coding upstream 53920 3901056 ~ 3933592 (+)
G40275 NA non-coding upstream 95619 3891632 ~ 3891893 (+)
G40301 NA non-coding downstream 8179 3996546 ~ 3997000 (+)
G40302 NA non-coding downstream 9838 3998205 ~ 3998553 (+)
G40303 NA non-coding downstream 10319 3998686 ~ 3998946 (+)
G40308 NA non-coding downstream 67475 4055842 ~ 4056370 (+)
LOC111192499 NA non-coding downstream 209192 4197559 ~ 4198754 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 131038 3837507 ~ 3856474 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other upstream 304328 3661675 ~ 3683184 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 585574 3382642 ~ 3401938 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 1176016 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 2192580 1761227 ~ 1794932 (+)
G40318 NA other downstream 146143 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 516030 4504397 ~ 4515611 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other downstream 1317320 5305687 ~ 5312344 (+)
G40756 NA other downstream 2544998 6533365 ~ 6533674 (+)
LOC107197696 NA other downstream 3838156 7826523 ~ 7826914 (+)

Expression


Co-expression Network