G40301


Basic Information

Item Value
gene id G40301
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 3996546 ~ 3997000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54357
ccgacttccagcactccagcgcggccggcttccagctctccagcgcggccgactttcAGCACTCCAGCTCGGCAGGCTTCCAGCTCTCTAGCCCGACCGGCTTCCAGATCTTCGACTCCGGCTCCGgaagcaagctccggtccggtGTTTACAACCACGCCCACTGCTGAATCTGCGGCTCCTGTCCGGATCTTggcggcagccgcactctcaGCTCCCGCTGAATCGGCGTCTTCGCCAGCTGTGCCAGCCGCTTCCAAGCCCGCGGCGGCAGCCGCCTCCACCGCAGCAGGACCCAccgcctctgtatcagcgctgcccgcggctcccgccgcctctgtaccagcgctgcccgcggctcccgccgcctctgtaccagcgctgcccgcggctcccgccgcctctggatcagcgctgcccgcggctcccgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54357 True 431 lncRNA 0.71 2 3996546 3997000

Neighbor

gene id symbol gene type direction distance location
il16 il16 coding upstream 246462 3690718 ~ 3750084 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 350858 3429482 ~ 3645688 (+)
arnt2 arnt2 coding upstream 718933 3122592 ~ 3277613 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 954446 3008334 ~ 3042100 (+)
zfand6 NA coding upstream 990221 2986365 ~ 3006325 (+)
LOC103021590 NA coding downstream 133622 4130622 ~ 4394295 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding downstream 437552 4434552 ~ 4490598 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 538234 4535234 ~ 4744552 (+)
efl1 efl1 coding downstream 765193 4762193 ~ 4933029 (+)
mex3b mex3b,LOC107736985,LOC107685193,LOC107709501,LOC107553747,LOC107662268 coding downstream 1004765 5001765 ~ 5006585 (+)
G40298 NA non-coding upstream 8179 3987512 ~ 3988367 (+)
G40294 NA non-coding upstream 17433 3978885 ~ 3979113 (+)
G40293 NA non-coding upstream 50771 3945576 ~ 3945775 (+)
G40291 NA non-coding upstream 62169 3934119 ~ 3934377 (+)
G40287 NA non-coding upstream 62954 3901056 ~ 3933592 (+)
G40302 NA non-coding downstream 1205 3998205 ~ 3998553 (+)
G40303 NA non-coding downstream 1686 3998686 ~ 3998946 (+)
G40308 NA non-coding downstream 58842 4055842 ~ 4056370 (+)
LOC111192499 NA non-coding downstream 200559 4197559 ~ 4198754 (+)
G40325 NA non-coding downstream 268859 4265859 ~ 4266532 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 140072 3837507 ~ 3856474 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other upstream 313362 3661675 ~ 3683184 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 594608 3382642 ~ 3401938 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 1185050 2597692 ~ 2811496 (+)
muc2 LOC108439647 other upstream 2201614 1761227 ~ 1794932 (+)
G40318 NA other downstream 137510 4134510 ~ 4135585 (+)
LOC103046723 LOC108439632 other downstream 507397 4504397 ~ 4515611 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other downstream 1308687 5305687 ~ 5312344 (+)
G40756 NA other downstream 2536365 6533365 ~ 6533674 (+)
LOC107197696 NA other downstream 3829523 7826523 ~ 7826914 (+)

Expression


Co-expression Network