LOC103046723 (LOC108439632)


Basic Information

Item Value
gene id LOC103046723
gene name LOC108439632
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 4504397 ~ 4515611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54463
CAGCAAcattaatgcaataaataagCAATAACGGGATTGAGTGTCACACTTTAAGGGCAAAAGATGTTGAGATATCGAGATAATCAGAGAAATCAGTTAAGAGTGTTGGACAAGTGGCTTGTTGtaaacagccaaaaaaaaaaaataataataataaaataaaatagtacaaCCAAAAAATGGAACAAAACCAATAAATAAGCTTCTGACAATGTTTTAAAGTGTTCTCTTCACTGGAGTCGTAAAATTAGCAGACAAATGGAAAACGAAAAAAGACTAAACAAGGCACATCAGGGACCAGCtcccttaaaggagaactctggtgtgaaagaGGACTAAACTTTGTTGAATATCCCACCTGCTTTCTccag
>XM_022669515.1
gagagaggccgGGAGAGAGCGGGAGTCAGTCACACTGTTCCTCAGTCCTCTGGGAGTCTTACACTGGTTAGTTGATAGAGTTTGGGAGAGTTGTGAAAGTATGTTGCTGCTAAACTTCAGCTGGCATTTTATATGAGGAGCTGCATCTGCATCTGATtgggatgaatgaatgaatgaagctgAGCCACTCTGGAGTTTTGAGAATTTTCTTTACTGTACTCAGATAAAGCTGGATGGCAGGCTGTGAAGGTGTGAGGTATGAGGGGCAGGGTGTGTAGAGGCCATGCAGGGTGAGGAACGGTCAATAGGGCCTGATGGAGGTCCAGCAGGGCTggagaaaacagaaacacagcatGAAGCCGAGGAGGCTCCCACGGTCCTGTTGCAGGAGGTCATCTGCTCTCCAGCTACTGCACCATCATCCATGGTCTCGGCAACCAGCTGCAGCAGTCTGAATGGAGAGGAGCCCTTCTGCCGGATTTGTCACGAGGGCCTCAGTGCAGGGGACCTGTTATCCCCGTGTGAGTGTGCAGGGACACTGGCCATGGTGCACCGGGTGTGTCTGGAGCACTGGCTCACTGCCTCCGGCACCAGCCACTGTGAACTCTGCCACTTCGAGTTCGCATTGGAGCGCCTGCCAAAGCCTTTCACTGAGTGGCTGGCCACTCCATCCATGCAGAGGCGGACGCTGTGCGGGGATATAATCTGCTTCCTGTTCATAACACCTCTGGCCAGTCTGTCCGGCTGGCTCTGTGTACAGGGAGCTCTGGACCTCTACTACAGTAACGGCATGGAGGCGTTCGGACTGCTCATGCTCACACTGGCCCTCTTTACCATCTACCTCTTCTGGACTGTTGTGTCCCTGCGTTACCATGTTCACCTGTTCAAGAGCTGGAGAGAAACCAACCCCAGAGTGAGGCTGCAGACACCCAGACCTGCACAGACCCCCCAGCGCCAACAAAACCTGGCACTGCACTTCTTATTCAAGGACAAAGGCAAGGAGACTGTGGTGTAGTTGCTGTGGAAGGACACCTGCGAGGACAAGATACCAGCACTGAGATTAGACCGTGACCGTGGCTTAGACCTGATTGTACAATcaacttttaaaaacacatcagtGAGCCAGCCAACCCCGGTTAACGCTGTTAATTGTTTTGACCAAAATTATCGACTTTTGATGGATTACATGAATATCTTGTTTATCAAGACACTCTCAGAAACTCATCTGGAGCTGTGATTGGCCAGGATCCTTATGGCACACAGTAAAATATGCATTGTAAAAGGTCAACAATGACCCAATAATGAACAAGAGTGGATATAAGGCCTTGTTTTGAACTGGAATAAAACTGGACATTCCTcaaggagtaaaaaaaaataaaaataaaaaatggaccGCAGCACAAATCAAACGGAGGAGGAatatttccatgtttaaacgcTGAACTGTTCCTTTCCATGACTGTACTGGAACTgcattgttatttatatatgtgcTTTAATAATCTTCTTTTAGAACAGCTGTAGATAATCAGCAGAAAACCAAACATCCACTTCATTGCAATCTTTATTAagtttacaaatataaaaagtacaCGTCAGCAAcattaatgcaataaataagCAATAACGGGATTGAGTGTCACACTTTAAGGGCAAAAGATGTTGAGATATCGAGATAATCAGAGAAATCAGTTAAGAGTGTTGGACAAGTGGCTTGTTGtaaacagccaaaaaaaaaaaa

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH3-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54463 False 371 lncRNA 0.35 1 4515241 4515611
XM_022669515.1 True 1741 mRNA 0.47 5 4504397 4515385

Neighbor

gene id symbol gene type direction distance location
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding upstream 13799 4434552 ~ 4490598 (+)
LOC103021590 NA coding upstream 110102 4130622 ~ 4394295 (+)
il16 il16 coding upstream 754313 3690718 ~ 3750084 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 858709 3429482 ~ 3645688 (+)
arnt2 arnt2 coding upstream 1226784 3122592 ~ 3277613 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding downstream 19623 4535234 ~ 4744552 (+)
efl1 efl1 coding downstream 246582 4762193 ~ 4933029 (+)
mex3b mex3b,LOC107736985,LOC107685193,LOC107709501,LOC107553747,LOC107662268 coding downstream 486154 5001765 ~ 5006585 (+)
selenos NA coding downstream 797029 5312640 ~ 5320139 (+)
chsy1 chsy1,LOC107662251,LOC107742304,LOC107755644 coding downstream 812617 5328228 ~ 5424313 (+)
G40388 NA non-coding upstream 8662 4477871 ~ 4495735 (+)
G40375 NA non-coding upstream 95536 4408620 ~ 4408861 (+)
G40333 NA non-coding upstream 163262 4339955 ~ 4341135 (+)
G40332 NA non-coding upstream 167749 4334763 ~ 4336648 (+)
G40325 NA non-coding upstream 237865 4265859 ~ 4266532 (+)
G40392 LOC108439631,LOC108270534,LOC107570199,LOC107702161 non-coding downstream 464 4516075 ~ 4531846 (+)
G40402 NA non-coding downstream 56842 4572453 ~ 4572730 (+)
G40401 NA non-coding downstream 182059 4697670 ~ 4751569 (+)
G40424 NA non-coding downstream 398278 4913889 ~ 4915973 (+)
G40504 NA non-coding downstream 547038 5062649 ~ 5062903 (+)
G40318 NA other upstream 368812 4134510 ~ 4135585 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 647923 3837507 ~ 3856474 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other upstream 821213 3661675 ~ 3683184 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 1102459 3382642 ~ 3401938 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other upstream 1692901 2597692 ~ 2811496 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other downstream 790076 5305687 ~ 5312344 (+)
G40756 NA other downstream 2017754 6533365 ~ 6533674 (+)
LOC107197696 NA other downstream 3310912 7826523 ~ 7826914 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 3996493 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 4202949 8718560 ~ 8762792 (+)

Expression


Co-expression Network