snrpa1 (snrpa1,LOC107742305,LOC107691971)


Basic Information

Item Value
gene id snrpa1
gene name snrpa1,LOC107742305,LOC107691971
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 5305687 ~ 5312344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54660
AGAATGCCATCGCAAACGCCACATCACTGGCTGAGGTGGAGAGGTTAAAGGGATTGCTCCAGGCTGGTCAGATCCCCGGCAGAGAAAACAGACAAGGTGCACAGAGCATGgtggaagaggaggaagaggagagtgAAGGGGGGATGCAGGAGTCGATGTACGAGGCTGAGCGTGGAGATGGAATGGAGGGAGATGAGGAGCAGGGCGAGAATCAGGAaggagagatggagatggaAGAAGATATGCATGTTAATGGATCGTAGTTGATTTAGTGTGGATGACTGATCAGAGTCAGCGGCCCTGTTGAGTTAGTAAAGTCTAGTTTTGAGTCAGGAGGCCGGAGTGTTTATGTATGATgggtatttcttttatttggccatcttttttgtaaattaagcacattaaagattttttttttttataaaattgtcaTTTTCTTGTTTACATGACCACATTGAACTAATTTGCTAATTCTAGAACACAAATTACTGTAAACTTAGTgtgatttgtttaattttttctcGTTATAAGCCCAAATTATCATTATGCATACCCTGATACGTTCAGTTTTTAGTACAAGATACa
>TU54663
AGAATGCCATCGCAAACGCCACATCACTGGCTGAGGTGGAGAGGTTAAAGGGATTGCTCCAGGCTGGTCAGATCCCCGGCAGAGAAAACAGACAAGGTGCACAGAGCATGgtggaagaggaggaagaggagagtgAAGGGGGGATGCAGGAGTCGATGTACGAGGCTGAGCGTGGAGATGGAATGGAGGGAGATGAGGAGCAGGGCGAGAATCAGGAaggagagatggagatggaAGAAGATATGCATGTTAATGGATCGTAGTTGATTTAGTGTGGATGACTGATCAGAGTCAGCGGCCCTGTTGAGTTAGTAAAGTCTAGTTTTGAGTCAGGAGGCCGGAGTGTTTATGTATGATgggtatttcttttatttggccatcttttttgtaaattaagcacattaaagattttttttttttataaaattgtcaTTTTCTTGTTTACATGACCACATTGAACTAATTTGCTAATTCTAGAACACAAATTACTGTAAACTTAGTgtgatttgtttaattttttctcGTTATAAGCCCAAATTATCATTATGCATACCCTGATACGTTCAGTTTTTAGTACAAGATACattgttcttttttaattactattttttgttgtttttatactTAAAATTTATAATGGGATTTTATAATTAAATTCCAGGTCAGTGTCCaaattgtaaataaactgaagttgactaaactcaaactcTCCAAGTTAAGTGTTTTgacagtaaaacagcaaaatttaaaaatgtatgtttttatggGTTCTAAAATGTATTGCTGACTGGAAAACTGAGTGTATTCTTATTGTTACATTAGtaatattcagtttattttgttttttctggATACCTTCTTCCAATCAATGCTTTTTTTGCTGTCAGAATAGAACTGAAACACTTGTCACCATGCTTGATGCCTGGCTTGGACCAGAGGGAGTATAGAGCTCCCAGTATGAAGCTGTGAATCAGTGCAACTCTCGAGAGAGTCTGAGTTCCAGCTCCATCCAGGACTTTTGGGATAAGTCAAGGATGAGGTGGGATGGGGctcatccaaaaaaaaatgtcctcaTTAACTTGTAAAAATCTAGTACAAAAGATTTGATAGACAATGTAGAGAAAGTTTGTCTTAAATTTcaattatatatgattttttttatatcattgtacatttttatgttatttaatgtattctaattactgctactgtgtgcTCGTGGGTTCTTGAGCTGATGTTGAAGTACAgttgcatctcagaaaattaggaTATCATTggaaaattactttatttcagtaattcagttcaaaatgtgaaactcatataatatatagatgtgttacacacagagtgatctatttaagtcTTTATTACTTATactgttgattatggcttacagccaatgaaaacccaaaaatcagtgtctctgaaaattaattaaaagaatgttatataagatcaattggtacttttggcagtgtggcaaatcctgctgaaaaatgtaatctgCAGATTTTGCCGGAAACACTGCATTCactttggatttaataaaacacagtggatcaacaccagcagatgacatgtctcttcaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgcaacatTTACTGAAATTTAAGGACGTtctggagagacatgtcatctgctggtgttgctgCACTGTGTtacatgctttcctctgctgacaacttttaaagagatgcagatttcagcaGGACTTCACACACTGCCaacatttttgggttttcattagctgtaatcCATAACCatccacaataaaaaataaacacttaatataGATCGCAcggtgtgtaatacatctacataataATTGCGTTTcacaactgaattactaaataaaataacttttttataatattctaatattttgagatgcacctgtaacaTCCAGACCATATTTTAAAGGGTTTTCTTCAAATCTAAAAGCTTTGAAATATGTCCGCACAACGGAAATATGTAAAATAGTTAAAGAAATGTGTTGAGaaatttagtacttttttt
>XM_022669521.1
CCGGGTTGGGGAAAACCTAGAGCAGTCTTTACCGAATTTAAAGGAGCTGGTCCTCACAAGTAATAACATTCAGGAACTGgGTGATCTGGATCCTCTTGCATCAGTGAAGACATTAACTCTACTCAGcctTTTAAGGAACCCAGTGACCAATAAGAAGCATTACAGACTGTATGTCATCAACAAACTTCCACAAATCCGCGTTCTGGATTTCCAGAAGGTGAAATTAAAGGAACGCCAGGAGGCTGAGACAATGTTCAAAGGCAAACGAGGTGCTCAGCTTGCAAAGGATATTGCCAAGCGCACGAAAACgttcaCTCCTGGTGCTGGAATACAGGCTGACCGGAAGAAGACTGGACCTTCTGCGGCGGATGTGGAAGCTATTAAGAATGCCATCGCAAACGCCACATCACTGGCTGAGGTGGAGAGGTTAAAGGGATTGCTCCAGGCTGGTCAGATCCCCGGCAGAGAAAACAGACAAGGTGCACAGAGCATGgtggaagaggaggaagaggagagtgAAGGGGGGATGCAGGAGTCGATGTACGAGGCTGAGCGTGGAGATGGAATGGAGGGAGATGAGGAGCAGGGCGAGAATCAGGAaggagagatggagatggaAGAAGATATGCATGTTAATGGATCGTAGTTGATTTAGTGTGGATGACTGATCAGAGTCAGCGGCCCTGTTGAGTTAGTAAAGTCTAGTTTTGAGTCAGGAGGCCGGAGTGTTTATGTATGATgggtatttcttttatttggccatcttttttgtaaattaagcacattaaagattttttttttttataaaattgtcaTTTTCTTGTTTACATGACCACATTGAACTAATTTGCTAATTCTAGAACACAAATTACTGTAAACTTAGTgtgatttgtttaattttttctcGTTATAAGCCCAAATTATCATTATGCATACCCTGATACGTTCAGTTTTTAGTACAAGATACattgttcttttttaattactattttttgttgtttttatactTAAAATTTATAATGGGATTTTATAATTAAATTCCAGGTCAGTGTCCaaattgtaaataaactgaagttgactaaa

Function

symbol description
snrpa1 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP. Is expressed in female organism. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A').

NR:

description
PREDICTED: U2 small nuclear ribonucleoprotein A'

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54660 False 585 TUCP 0.41 2 5308546 5310807
TU54663 True 2122 lncRNA 0.35 2 5308546 5312344
XM_022669521.1 False 1083 mRNA 0.41 7 5305687 5310922

Neighbor

gene id symbol gene type direction distance location
mex3b mex3b,LOC107736985,LOC107685193,LOC107709501,LOC107553747,LOC107662268 coding upstream 299102 5001765 ~ 5006585 (+)
efl1 efl1 coding upstream 372658 4762193 ~ 4933029 (+)
LOC103028701 adamtsl3,LOC107736989,LOC107685222,LOC107662271,LOC107591308 coding upstream 561135 4535234 ~ 4744552 (+)
LOC103022507 sh3gl3,LOC108439633,LOC108271217,LOC107709492,LOC107591296,LOC107685195 coding upstream 815089 4434552 ~ 4490598 (+)
LOC103021590 NA coding upstream 911392 4130622 ~ 4394295 (+)
selenos NA coding downstream 296 5312640 ~ 5320139 (+)
chsy1 chsy1,LOC107662251,LOC107742304,LOC107755644 coding downstream 15884 5328228 ~ 5424313 (+)
lins1 NA coding downstream 397356 5709700 ~ 5717935 (+)
cers3 cers3 coding downstream 410532 5722876 ~ 5750365 (+)
adamts17 adamts17 coding downstream 450307 5762651 ~ 5779274 (+)
G40511 NA non-coding upstream 142358 5133530 ~ 5163329 (+)
G40510 NA non-coding upstream 151163 5147625 ~ 5154524 (+)
G40504 NA non-coding upstream 242784 5062649 ~ 5062903 (+)
G40424 NA non-coding upstream 389714 4913889 ~ 4915973 (+)
G40401 NA non-coding upstream 554118 4697670 ~ 4751569 (+)
G40556 NA non-coding downstream 132849 5445193 ~ 5458624 (+)
G40617 NA non-coding downstream 436787 5749131 ~ 5749712 (+)
G40660 NA non-coding downstream 528210 5840554 ~ 5840773 (+)
G40692 NA non-coding downstream 752054 6064398 ~ 6064642 (+)
G40695 NA non-coding downstream 779527 6091871 ~ 6092282 (+)
LOC103046723 LOC108439632 other upstream 790076 4504397 ~ 4515611 (+)
G40318 NA other upstream 1170102 4134510 ~ 4135585 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 1449213 3837507 ~ 3856474 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other upstream 1622503 3661675 ~ 3683184 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other upstream 1903749 3382642 ~ 3401938 (+)
G40756 NA other downstream 1221021 6533365 ~ 6533674 (+)
LOC107197696 NA other downstream 2514179 7826523 ~ 7826914 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 3199760 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 3406216 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 3609584 8921928 ~ 8935486 (+)

Expression


Co-expression Network