G40794


Basic Information

Item Value
gene id G40794
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 7071816 ~ 7072047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU54949
cgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccaactaacatcaaacacaccacaaccacccgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcccatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccaactaacatcaaacacaacacaaccacccgtctcacatttaccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54949 True 232 lncRNA 0.43 1 7071816 7072047

Neighbor

gene id symbol gene type direction distance location
pcdh17 pcdh17,LOC107572292,LOC107687749,LOC107739552,LOC107718221 coding upstream 58029 6877772 ~ 7013787 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC108439929,LOC107551808 coding upstream 1235729 5814514 ~ 5836087 (+)
adamts17 adamts17 coding upstream 1292542 5762651 ~ 5779274 (+)
cers3 cers3 coding upstream 1321451 5722876 ~ 5750365 (+)
lins1 NA coding upstream 1353881 5709700 ~ 5717935 (+)
xxylt1 xxylt1 coding downstream 1030228 8102275 ~ 8162958 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding downstream 1289790 8361837 ~ 8377825 (+)
tmem44 NA coding downstream 1310209 8382256 ~ 8400857 (+)
atp13a3 atp13a3,LOC106613657 coding downstream 1387468 8459515 ~ 8498939 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding downstream 1479923 8551970 ~ 8636478 (+)
G40784 NA non-coding upstream 72725 6954150 ~ 6999091 (+)
G40783 NA non-coding upstream 118251 6951786 ~ 6953565 (+)
G40780 NA non-coding upstream 182517 6888830 ~ 6889299 (+)
G40763 NA non-coding upstream 455648 6615966 ~ 6616168 (+)
G40759 NA non-coding upstream 530861 6540706 ~ 6540955 (+)
G40838 NA non-coding downstream 410711 7482758 ~ 7483102 (+)
G40839 NA non-coding downstream 423282 7495329 ~ 7495560 (+)
G40842 NA non-coding downstream 437131 7509178 ~ 7512682 (+)
G40902 NA non-coding downstream 640287 7712334 ~ 7712583 (+)
G40910 NA non-coding downstream 716403 7788450 ~ 7789606 (+)
G40756 NA other upstream 538142 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 1759472 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 2556205 4504397 ~ 4515611 (+)
G40318 NA other upstream 2936231 4134510 ~ 4135585 (+)
LOC103044341 nlgn1,LOC107564928 other upstream 3215342 3837507 ~ 3856474 (+)
LOC107197696 NA other downstream 754476 7826523 ~ 7826914 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 1440057 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 1646513 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 1849881 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 2923662 9995709 ~ 10022964 (+)

Expression


Co-expression Network