G40987


Basic Information

Item Value
gene id G40987
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8499763 ~ 8500064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55167
agacatatatacatagactctgcatagtcTGCCTACTGGCTTAGCAGTCCAGTGGCGCCCAGTGTGTTTATGTACACTGAGGAAGGTAAGATGTTTAATgcacctataataatcacaactgtagtaatgatacaggatgctgtcacacattacaaatacctgctttcatgctgaaactttgttaaagagcataatacacAGTATTTCTCAGTGTAAATAATTATGCCTCGAAACTGGGCGCCGTCTGCTATGctaggaggcaggctatgcggagtctatgtatatatgtctatgttgtCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55167 True 302 lncRNA 0.40 1 8499763 8500064

Neighbor

gene id symbol gene type direction distance location
atp13a3 atp13a3,LOC106613657 coding upstream 824 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 98906 8382256 ~ 8400857 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding upstream 121938 8361837 ~ 8377825 (+)
xxylt1 xxylt1 coding upstream 336805 8102275 ~ 8162958 (+)
pcdh17 pcdh17,LOC107572292,LOC107687749,LOC107739552,LOC107718221 coding upstream 1485976 6877772 ~ 7013787 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding downstream 51906 8551970 ~ 8636478 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding downstream 160935 8660999 ~ 8701071 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding downstream 202378 8702442 ~ 8716742 (+)
LOC103026226 LOC108439428 coding downstream 328024 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 442778 8942842 ~ 8986586 (+)
LOC111192502 NA non-coding upstream 45348 8409462 ~ 8454415 (+)
G40952 NA non-coding upstream 330226 8167779 ~ 8169537 (+)
G40950 NA non-coding upstream 334102 8165391 ~ 8165661 (+)
G40949 NA non-coding upstream 334492 8164952 ~ 8165271 (+)
G40947 NA non-coding upstream 335696 8163711 ~ 8164067 (+)
G40985 NA non-coding downstream 850 8500914 ~ 8502742 (+)
G40986 NA non-coding downstream 2806 8502870 ~ 8504310 (+)
G40984 NA non-coding downstream 4554 8504618 ~ 8511612 (+)
G40989 NA non-coding downstream 21217 8521281 ~ 8522409 (+)
G41040 NA non-coding downstream 263085 8763149 ~ 8765880 (+)
LOC107197696 NA other upstream 672849 7826523 ~ 7826914 (+)
G40756 NA other upstream 1966089 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3187419 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 3984152 4504397 ~ 4515611 (+)
G40318 NA other upstream 4364178 4134510 ~ 4135585 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 12040 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 218496 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 421864 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1495645 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 3071162 11571226 ~ 11580329 (+)

Expression


Co-expression Network