G40989


Basic Information

Item Value
gene id G40989
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8521281 ~ 8522409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55171
acacagggtaatacaggcaaacacacacagggtaatacaggcaaacacagggtaatacaggcaaacacagggtaatacaggcaaacacatacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacaccacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacagggttaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacaacagggtaatacaggcaaacacacacagggtaatacaggcaaacacacacagggtaATACAGATAAAGACATGgtaaaatagacaaacacagggtaatacaggcaaacacacacagggtaatacaggcaaacacagggaAATACAGGCAAACAGggtaatacaggcaaacacacacagggtaatacaggcaaacacagggtaatacaggcaAAC

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU55171 True 633 lncRNA 0.45 2 8521281 8522409

Neighbor

gene id symbol gene type direction distance location
atp13a3 atp13a3,LOC106613657 coding upstream 22342 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 120424 8382256 ~ 8400857 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding upstream 143456 8361837 ~ 8377825 (+)
xxylt1 xxylt1 coding upstream 358323 8102275 ~ 8162958 (+)
pcdh17 pcdh17,LOC107572292,LOC107687749,LOC107739552,LOC107718221 coding upstream 1507494 6877772 ~ 7013787 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding downstream 29561 8551970 ~ 8636478 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding downstream 138590 8660999 ~ 8701071 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding downstream 180033 8702442 ~ 8716742 (+)
LOC103026226 LOC108439428 coding downstream 305679 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 420433 8942842 ~ 8986586 (+)
G40984 NA non-coding upstream 9669 8504618 ~ 8511612 (+)
G40986 NA non-coding upstream 16971 8502870 ~ 8504310 (+)
G40985 NA non-coding upstream 18539 8500914 ~ 8502742 (+)
G40987 NA non-coding upstream 21217 8499763 ~ 8500064 (+)
LOC111192502 NA non-coding upstream 66866 8409462 ~ 8454415 (+)
G41040 NA non-coding downstream 240740 8763149 ~ 8765880 (+)
LOC111192503 NA non-coding downstream 247645 8770054 ~ 8771261 (+)
G41087 NA non-coding downstream 282575 8804984 ~ 8805203 (+)
G41099 ncbp2 non-coding downstream 415009 8937418 ~ 8942071 (+)
G41097 NA non-coding downstream 432394 8954803 ~ 8988103 (+)
LOC107197696 NA other upstream 694367 7826523 ~ 7826914 (+)
G40756 NA other upstream 1987607 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3208937 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 4005670 4504397 ~ 4515611 (+)
G40318 NA other upstream 4385696 4134510 ~ 4135585 (+)
LOC103027717 LOC108428455 other downstream 196151 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 399519 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1473300 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 3048817 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 3147038 11669447 ~ 11709683 (+)

Expression


Co-expression Network