G41040


Basic Information

Item Value
gene id G41040
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8763149 ~ 8765880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55236
tgtgtgtgtgtgagggcatGATTTGTTTGTGTAAATACATGTGAATAATTTACACTGACATCATTATGCACTGGTGGTTTGCGTGGCGGAAACGAATTGTTTTGCACAGTaaccccccccttGTGGACATGTTGAGAAGTGCACACGGTTCGAGACTGTTTTTAATGtgccataaatataaatctagCTATATCACGAGGAGTAAACCCCTCAGTAATTCTGCTGTATCCGAACCACGGACTCCACGACTGACAATCATGTGAATCGAAAGCTGAGTGGCCTGACAATGCATGATCCAAAGACTTTTATTTGTGACACTGCAggaagtttaaaaaaacaaacacaaaaaaaaaaagcttcttccATCTCATTCGACTGAGCCTACTTGTTTTGCCTGTGCTACTGAATCATCCAGATACACTGAAAATGTGCACAGCCTCAAACCACCCATGGAAAAGCTGCAGTACGTTGTGCAATGAAAACGCATATATTCAGTCTCCTGCAAAAGTTTGTGCACCCCTGGCCTGATGAGCTGTTTTGAGATTAATTCAATTAGAATTGTGTGAATTGAAAGGAGGATATTTGAAAGCCACAGAAAACACTGGGTGTATTAATATAGAAGTATAGAATAGTTTAGATAAAACAAGCTAACAAATTTAATTTCTTTAGACCTATATGGACAGGATtaatttctcagggggacatctgaaataaaaaatatttgatgtgatgtgatcaaactcctgcatccggattgcaattgtaaaaacaggaggaccagtcatttttaggcttttttctcggtcacatgacattcaggcgttcagtagctcctccatttccactcgctgttgtgtttttaatgtggatctccgtggaaacgtgtgCCCAAAGTATAATTACGATGCGCGGCAGTGgccaaatagctattttattaaacgcgaggagacaaaactcagaaATGTGCATCCAGACGgtactaaaattaccggaggaccacagagttcagtagataaaaaacagtagataattcagcctgtaattttctcagaggacgtctaagaaaaaaaaacacttacatgatcgttctggacgggaataaaatcacagaggataaaaaccccccataaaagagaaaattaccccagaaccccctgagaaactaattccatccagatagagcttTAGACTTTAGACACTAAAGTTCATTTAGTGGCTTATTTTAATGGATCAGTTATCAtctcttttattttcagacTAAATCAGTTCCAAATCAGTCACATGTAGAGCTGGACAATTTGAGAAAAATCtctattacaatatatattaattttggtCGATGCAACataattctgatatttttttataaacggTATACAAGCCACCACCATTATtgtacagaaatatataaaatattgtatcaaTATTTAAAGTAGAGAACTGTCTGAGGACTTAAGATCCATAAGATTGtggaaaaatagcaaaaatatctaaaataaaaaagtccatCTACAGAGAACTTGATGTAATTCcagatatgtaaaaaaaataaataaatagttttagagataaataatgttattattactaGTCAAAACACAAATTGTATGGAGGATCAGAGCTTAATTTACCaggactttaaaataaatttaaaactttaaaaaaaactaataaaccCACCAAATAAAAATTGTGATTCTATATTacgatatatttcttaatttcagtcAAAGTGAAACAATTCTGATATCGatatgaaaagtaaaaaaaaagccatacCCCTTATATCTGTAATCACACACTAGTAAGAGCTGGGAAATACgataaaaatgttacattttcacGATACACTGtgttcattatatataaatatatatatattatatatatatatatatatatattttttacactctctgtaataaaatgtacaggtgGGTCATCTCTGAATCTGCCTATCGCCATACCCCTAGTCTTATTTTCAGGTAGAGACAATAGTGTGTGAACAGTGTTCTGCagctggctgtttttttttttttgtttttttttttttgctgaataggtcatcactgagcttcagtaaggttgctgagTGGAAGGGGAAGAAAACTCTGTTTAGTGTTTGGAAATCGGACAGTTTAGCCATTCCACTCACtctcatttattactgattgttccttaAAGTACTGATACAAGTCGATACGATAGGAACATTTAtgttaatacaataaaacattgatAAATTGTCCAGCTCTGGTCACATGCCTGGATTGCTAATCAAGAGTTTAGGCTACTTTCAACCGACACTACCAGCCCCATTAATCgctatttgttttgtttttttcttttctgcttAGATTAGATTTGGATTTAACCTTTTTGGTTTACTTGTGTTTCTATGGGTATACAGTAATTCATGTTTGTTTGGCAACAGAAGTTAAATAATTTCCTACTCAGTTAAAAACAGCATAATGTGTTATTTGGCcatgggtgtccaaacttttgaataaGACAGTATGTGTTGTACTTTGGAACAGGTTTATATTCTGATTTGTGtacattaatgtaaataatactgTAAGATAGAAAGAGTATATGCTGTCAGAATCTCTCTATATTGCTTGTACAGAGATGAAGATCTATCTGGTAAATggtgaataaatatattgtgatgttCACTGAAAAATCGGTCCTGTAATTATCTAAAACATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55236 True 2712 lncRNA 0.34 2 8763149 8765880

Neighbor

gene id symbol gene type direction distance location
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 46407 8702442 ~ 8716742 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 62078 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 126671 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 264210 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 362292 8382256 ~ 8400857 (+)
LOC103026226 LOC108439428 coding downstream 62208 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 176962 8942842 ~ 8986586 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 232270 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 363978 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 428305 9194185 ~ 9255897 (+)
G40989 NA non-coding upstream 240740 8521281 ~ 8522409 (+)
G40984 NA non-coding upstream 251537 8504618 ~ 8511612 (+)
G40986 NA non-coding upstream 258839 8502870 ~ 8504310 (+)
G40985 NA non-coding upstream 260407 8500914 ~ 8502742 (+)
G40987 NA non-coding upstream 263085 8499763 ~ 8500064 (+)
LOC111192503 NA non-coding downstream 4174 8770054 ~ 8771261 (+)
G41087 NA non-coding downstream 39104 8804984 ~ 8805203 (+)
G41099 ncbp2 non-coding downstream 171538 8937418 ~ 8942071 (+)
G41097 NA non-coding downstream 188923 8954803 ~ 8988103 (+)
G41127 NA non-coding downstream 365229 9131109 ~ 9163752 (+)
LOC103027717 LOC108428455 other upstream 357 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 238836 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 936235 7826523 ~ 7826914 (+)
G40756 NA other upstream 2229475 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3450805 5305687 ~ 5312344 (+)
LOC103022991 NA other downstream 156048 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1229829 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2805346 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2903567 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2988007 11753887 ~ 11758708 (+)

Expression


Co-expression Network