LOC103027717 (LOC108428455)


Basic Information

Item Value
gene id LOC103027717
gene name LOC108428455
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8718560 ~ 8762792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55239
GCTGAGGGCCGTCTGGAGCCGCCTGGGCAGGAATGATCCCCGCAGAGGCCGGCCGGCCGTCGTGTGGGGAGCGGGTTGTGTTTAGCGGCTCGTCCGCTGCGGAGTGAAGGAGGAGCGGAGAAACTGCAGCCCGTCTTCCCGCACAGGAGCGCGACTTATCCCCGCAGCATCTACCGCAGCCCCCCGGCTGTTTAACCAGCGATCAGCAGACGAGACGAGATGGCGAATCAGATGACGAGTCAGATCCTCCCTCCCCTACACTACTGAAGCCGGAGTGAGCGAGGTGGACCATGCTCTGTCCAGAGCGGGGCGTGGTGGAGGAATGGCTCTCAGAATTCAAGACGTTACCTGATGACCTGATCCCGGGCTATACGTGTCATCTGCGTCTGAAGAAAGGCCTGGTTCCTGCTCTGTATGCTGTGATTCAGGAGCAGCCCTGCAGTGAGGTAGACCCTCAGCTCTTTATGTTCTGTGACTCTCTGTTCTGCTGTTTGTTCTGTGTAGATttttactactgtatttttttgtactttaaaactaaaaaaagccaGTCCAGAATCCATTGAATAAAC
>XM_022670148.1
AGGACGCGCGTCAGCCTGCAGAGCTTCGAGGTggcgaggagagagagagagagatccgaGCACAGGAGGAGGATTCTCCGGGTCTTACCGCTCTCTGAGGCCGCTCTTTACGCCGCCGGAGCCGCGCTGAGGGCCGTCTGGAGCCGCCTGGGCAGGAATGATCCCCGCAGAGGCCGGCCGGCCGTCGTGTGGGGAGCGGGTTGTGTTTAGCGGCTCGTCCGCTGCGGAGTGAAGGAGGAGCGGAGAAACTGCAGCCCGTCTTCCCGCACAGGAGCGCGACTTATCCCCGCAGCATCTACCGCAGCCCCCCGGCTGTTTAACCAGCGATCAGCAGACGAGACGAGATGGCGAATCAGATGACGAGTCAGATCCTCCCTCCCCTACACTACTGAAGCCGGAGTGAGCGAGGTGGACCATGCTCTGTCCAGAGCGGGGCGTGGTGGAGGAATGGCTCTCAGAATTCAAGACGTTACCTGATGACCTGATCCCGGGCTATACGTGTCATCTGCGTCTGAAGAAAGGCCTGGTTCCTGCTCTGTATGCTGTGATTCAGGAGCAGCCCTGCAGTGAGGTAGACCCTCAGCTCTTTATGTTCTGTGACTCTCTGTTCTGCTGTTTGTTCTGTGTAGATttttactactgtatttttttgtactttaaaactaaaaaaagccaCGTGGGGGCAGCCGGGTTAATAACAcCCTCTAGTCTGGGCTCGATGGCGCTGACGGAGGGAGCTCTAAGCCAGCATGACCTGATCCGGGTGGTGTACAGCGGCCTGCTGCCCCAGAGAGAAACCTTCACCTCCCAGAACAGGTTCGAGGTGCTGTCCTTTCTTATGCTGTGCTACAACTCTGCTGTGGTCTACATGCCTGCGTCCTCCCACCAATCAGCCTGCAGAATGAGCTCACGgttgtgtgtgtgcggtTACCCGCGGCAGCAGCAGAAGTTATGGCGGGAGCCCTGTAACCGCGTGCGCCTGGACCCGGAGTTTATGGTGCAAATGCTGACGGCAGTTTACCATGCCATCTACAATGGCCAGTGGGACCTGGGCAGAGAAGCTTTGGAGGACATCTTATACAGAACACAGCTAGAACTTTACGCCCAGCCATTACTGGTGGCGAATGCTATGAATCGTTCTTTACCGCCCCGGCCTCCAGAGGGCACGAGGAATCTTCTGGAGGTGGAGGTGACTCCCACTAACAAACGTGTTTCTCAAACAGCCATCACTGCTGCCTCCATCCGCAGACTCCGCTGGAAACGAGAGgATCGTTTTGATTTCTCAACCACGGCCGATTTCTACGCCTCCATCACCCCCAGCCGATACTCTCCCCCGGGGAAAGCAGCCAATCCCGTGCCACCCGGCTGGACAAAGTGCACCATCCAGCTAGCTATGAGAGGCGATGCTGACGGTGTGAGCTGTGGCGAGGACTCGTTTGATCCAGACGAGGGCTTCTCCTCAGGGGCCTCCAGCAGCAGCCAGCCCAGCAGCGTGAAGCGGGACTGGGCCGCAGGGGCCCGAGCGTCCCGGGACCCGGCGGGGAGGAACCGAGAGAGCAGTTCAGCGGACACTCGCGCCGCCCTGCGCCGACTCCACCAGCGGCACCAGTCCCCCCCGCCCGCCGTCAACCTCCGCACTGCGGAGAGCAGCCGCAGCCCCAGTCCCAGCACCACCCGGAGGTTCCTGGACCCCCATTACATTCCACCCTTCACCGGCCCCCCGCCCAGAACTGGTAGCACCTCTTCCAGTAAGTCTCTGGACTGCACCGGCCTCAACGGCTCGTCCGGACCCACCGACAGCCTGTCCCTGGGCAGCCTGAGTGCGGACAGAGCCCACTGCCTGTCCGCTATAAGCCTGCAGGAGGAGCAGCTCGGCCGGGCAGCGAGGAGCCAGGACCTCCTGTCTCCTGGAAGCCCCTTCTCCTCTGGAAGCCCCCTGTCCAAAGAGTCCCGCTCGTccagttttaatatgcagatTATATCACAAGTGTAAATTAGTCGTGGCTAAGGGCagggctgagtgtgtgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtttgtgtatgtacaACTGTACTAGGTACATGGTTGGTGAATGAAATGTTATGTGCATATTATGTATGAGCATGTctttttgatgtgtgtgtgtgggtgtgaaaaAGAAACGTATCAATGTACTTTGTGCGTGAGAGTGAGTGCGTGAGAGTACGTGAGTGTGCGTAAAAGTGTAGCTGCATTCCAAAGCCTAGGCTGTGGTCTTTTATTGGTCATAcctatgaaaatataaaaaagctaaTTGGTTTAGTCTGGaaataattggttaattggttgtgATTGGTAGATAGCttgtttgaatcccagtcatgcagcttgccatccgctgccagagccctgagagagcacaattgtccttgctctctctgggtgagtagagtAGATGGCTCTCTTTCTCCCgttctcatcactcctagggtgatgtggatcagcacaaggctgcatctgtgagctgatgtatcagaaccgagtgcgctttcctccgagaggcggagtctgacttcacatgtgttgaaggaggcatgtgctactggcatatacagctgagtagcagctgaatgggttgGTCAATTGGTTTAGCTAAATTGTAAGAaaatgacagattttttttctatatat

Function

NR:

description
PREDICTED: protein FAM126B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55239 False 572 lncRNA 0.55 4 8718685 8742743
XM_022670148.1 True 2682 mRNA 0.56 12 8718560 8762792

Neighbor

gene id symbol gene type direction distance location
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 1818 8702442 ~ 8716742 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 17489 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 82082 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 219621 8459515 ~ 8498939 (+)
tmem44 NA coding upstream 317703 8382256 ~ 8400857 (+)
LOC103026226 LOC108439428 coding downstream 65296 8828088 ~ 8919744 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 180050 8942842 ~ 8986586 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 235358 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 367066 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 431393 9194185 ~ 9255897 (+)
G40989 NA non-coding upstream 196151 8521281 ~ 8522409 (+)
G40984 NA non-coding upstream 206948 8504618 ~ 8511612 (+)
G40986 NA non-coding upstream 214250 8502870 ~ 8504310 (+)
G40985 NA non-coding upstream 215818 8500914 ~ 8502742 (+)
G40987 NA non-coding upstream 218496 8499763 ~ 8500064 (+)
G41040 NA non-coding downstream 357 8763149 ~ 8765880 (+)
LOC111192503 NA non-coding downstream 7262 8770054 ~ 8771261 (+)
G41087 NA non-coding downstream 42192 8804984 ~ 8805203 (+)
G41099 ncbp2 non-coding downstream 174626 8937418 ~ 8942071 (+)
G41097 NA non-coding downstream 192011 8954803 ~ 8988103 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 194247 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 891646 7826523 ~ 7826914 (+)
G40756 NA other upstream 2184886 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 3406216 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 4202949 4504397 ~ 4515611 (+)
LOC103022991 NA other downstream 159136 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1232917 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2808434 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2906655 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2991095 11753887 ~ 11758708 (+)

Expression


Co-expression Network