G41097


Basic Information

Item Value
gene id G41097
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8954803 ~ 8988103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55334
ataaaagttgttatcagcagagggaagctgtaagatatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgactctccattaaaccatcactgatcatcagtaaattttacatttcatttgtaaatcaagggagcagagtctggaggaagagtggagagacacagtccaaactgctcgaggtctagtgtgagaCCTCCTTACTGCAAGAGTACACAACGTTAATATCAGCAAAAAGCTAAAATTCTGATTTATCGTAGTTCATAGTTCATCTTTTGATCTGAAAAAaacgtttaccatgtttacacaGCTCTTTAAAAACAGAACAGGTATGAATATGCACTGTGCAGCACTtgcttatttatataattatcttATGCATTAGGAGATACACACTGAGGGGAACAAATAGCTTACATGGAACAGTAGATACGTTGGGAagagttgtttttcttttgttttattggtattttttcatgttttattttacataatcaTCTGCAATATACTTGACTTTTCCGCTGGGAGCAGTGATGCTGTAATGCAGGAGTCGTGGACTGAGAGCATGgatcattttctattttaatttcttctatCTTCATGTTTGGGGATAGGTGATGCTGCAATGCTCAGTGCTTTTATCTAATATAGTAATATTTAactgttaaatatttatgttaaattgATGGTGTTTATGTGTCTAATGTTCCTCAAAGTCCTGAATTTGTTTGCCTGAGTCTTTGTGTGtcagtgattaaaaaataatattgtgctTGTTTGggagttattaaaaaaaaagaaaattatatattttagtttttacagtTGTAAAACTATACAGTTTAACCCTGTCCCTCTGCACTTCTCAGAACTCAAAGCAAGAAATATCCCACTCTGTTTCCTGCTTACACTGTACTACTcaagtaaattattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55334 True 996 lncRNA 0.34 2 8954803 8988103

Neighbor

gene id symbol gene type direction distance location
LOC103026226 LOC108439428 coding upstream 35059 8828088 ~ 8919744 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 238061 8702442 ~ 8716742 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 253732 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 318325 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 455864 8459515 ~ 8498939 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 10047 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 141755 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 206082 9194185 ~ 9255897 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding downstream 438066 9426169 ~ 9713508 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding downstream 958089 9946192 ~ 9953281 (+)
G41099 ncbp2 non-coding upstream 12732 8937418 ~ 8942071 (+)
G41087 NA non-coding upstream 149600 8804984 ~ 8805203 (+)
LOC111192503 NA non-coding upstream 183542 8770054 ~ 8771261 (+)
G41040 NA non-coding upstream 188923 8763149 ~ 8765880 (+)
G40989 NA non-coding upstream 432394 8521281 ~ 8522409 (+)
G41127 NA non-coding downstream 143006 9131109 ~ 9163752 (+)
G41131 NA non-coding downstream 176906 9165009 ~ 9168734 (+)
G41136 NA non-coding downstream 218218 9206321 ~ 9232010 (+)
G41137 NA non-coding downstream 263414 9251517 ~ 9280561 (+)
G41235 NA non-coding downstream 314522 9302625 ~ 9302915 (+)
LOC103022991 NA other upstream 19317 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 192011 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 430490 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1127889 7826523 ~ 7826914 (+)
G40756 NA other upstream 2421129 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1007606 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2583123 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2681344 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2765784 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 3346241 12334344 ~ 12340913 (+)

Expression


Co-expression Network