G41099 (ncbp2)


Basic Information

Item Value
gene id G41099
gene name ncbp2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8937418 ~ 8942071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55337
AAATGGAAAAAATCTGGTGAAATTTTAACACTCATTGTAGGCATCACATctccaaatgaacagttttagCTCAAAAGAATTTACTTCAATATGCacattagattttttaaaaatcttttgcGCCTAGACACGTGCCTGCTAATCATGAATCCTACCACTAAAATTTAAGAGGTACTTCTGTAGTTCTCTGTAGCTGGGCTAATTTGCCGTATCCACCTCGTGCGGGATCGTAGTCCTGTCTGTATTCATCTCTGACCTGGCCTCCAGATTTGCCACGGCCATACTGTCGTCCCTCCTTGAAGCCAGCGTCCCAATCAGTTCTTATGATCCTATCATCCAGCCTGGTTCCATTAATAAACCTCATTGCATGCTCAGCACACGCTGTTTTCTTGACCTTGTCGAGGCCGATGACAATCCTTTTCACATCTCCACTTTTGGAGAACAGCTCATAAACTTGCTCCTCGGTCGTGTAGAACGAAAGATTTCCAACATAAAGCGTGTTGCTCTGCTTTAGAAGCTTCTCCTGCTCATATCGATTACCCTTGAAATGTTGGTCTCTGTACTGACTGACATCGATATAGGAGTCGCTGAACAGCGCGTTTAATTTATTAGACATGATGGAGAAGTGTACTATCGCTCAGAACAGCGTTAGCAAACAAAGGCTAGCGAGCAGCTCTCAGTGCAGTCCGAGCAGCGGCTCTTTATTCCG

Function

symbol description
ncbp2 Predicted to enable RNA 7-methylguanosine cap binding activity; mRNA binding activity; and snRNA binding activity. Predicted to be involved in mRNA cis splicing, via spliceosome; positive regulation of RNA export from nucleus; and snRNA export from nucleus. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of nuclear cap binding activity complex. Orthologous to several human genes including NCBP2 (nuclear cap binding protein subunit 2).

NR:

description
PREDICTED: protein phosphatase 1 regulatory inhibitor subunit 16B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55337 True 709 lncRNA 0.44 4 8937418 8942071

Neighbor

gene id symbol gene type direction distance location
LOC103026226 LOC108439428 coding upstream 17674 8828088 ~ 8919744 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 220676 8702442 ~ 8716742 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding upstream 236347 8660999 ~ 8701071 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding upstream 300940 8551970 ~ 8636478 (+)
atp13a3 atp13a3,LOC106613657 coding upstream 438479 8459515 ~ 8498939 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding downstream 771 8942842 ~ 8986586 (+)
mcf2l2 LOC108439422,LOC108270998 coding downstream 56079 8998150 ~ 9104845 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding downstream 187787 9129858 ~ 9187127 (+)
ect2 ect2,LOC107674529,LOC107718889 coding downstream 252114 9194185 ~ 9255897 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding downstream 484098 9426169 ~ 9713508 (+)
G41087 NA non-coding upstream 132215 8804984 ~ 8805203 (+)
LOC111192503 NA non-coding upstream 166157 8770054 ~ 8771261 (+)
G41040 NA non-coding upstream 171538 8763149 ~ 8765880 (+)
G40989 NA non-coding upstream 415009 8521281 ~ 8522409 (+)
G40984 NA non-coding upstream 425806 8504618 ~ 8511612 (+)
G41097 NA non-coding downstream 12732 8954803 ~ 8988103 (+)
G41127 NA non-coding downstream 189038 9131109 ~ 9163752 (+)
G41131 NA non-coding downstream 222938 9165009 ~ 9168734 (+)
G41136 NA non-coding downstream 264250 9206321 ~ 9232010 (+)
G41137 NA non-coding downstream 309446 9251517 ~ 9280561 (+)
LOC103022991 NA other upstream 1932 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 174626 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 413105 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1110504 7826523 ~ 7826914 (+)
G40756 NA other upstream 2403744 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1053638 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2629155 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2727376 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2811816 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 3392273 12334344 ~ 12340913 (+)

Expression


Co-expression Network