G41136


Basic Information

Item Value
gene id G41136
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9206321 ~ 9232010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55394
ctacctgcactcactcctgaaggcttacgctacctcccggccgctgcgctcctccaatgaacgtcgcctcgctttgccaaacaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcgctatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaacacactaactattctaatctcatttccttcttcccctccttcactcctctatcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55394 True 296 lncRNA 0.47 2 9206321 9232010

Neighbor

gene id symbol gene type direction distance location
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding upstream 19194 9129858 ~ 9187127 (+)
mcf2l2 LOC108439422,LOC108270998 coding upstream 101476 8998150 ~ 9104845 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding upstream 219735 8942842 ~ 8986586 (+)
LOC103026226 LOC108439428 coding upstream 286577 8828088 ~ 8919744 (+)
LOC103028050 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 489579 8702442 ~ 8716742 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding downstream 194159 9426169 ~ 9713508 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding downstream 714182 9946192 ~ 9953281 (+)
LOC103039038 NA coding downstream 727447 9959457 ~ 9968160 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding downstream 736401 9968411 ~ 9970748 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding downstream 741543 9973553 ~ 9979584 (+)
G41131 NA non-coding upstream 37587 9165009 ~ 9168734 (+)
G41127 NA non-coding upstream 42569 9131109 ~ 9163752 (+)
G41097 NA non-coding upstream 218218 8954803 ~ 8988103 (+)
G41099 ncbp2 non-coding upstream 264250 8937418 ~ 8942071 (+)
G41087 NA non-coding upstream 401118 8804984 ~ 8805203 (+)
G41137 NA non-coding downstream 19507 9251517 ~ 9280561 (+)
G41235 NA non-coding downstream 70615 9302625 ~ 9302915 (+)
G41240 NA non-coding downstream 105838 9337848 ~ 9338218 (+)
G41241 NA non-coding downstream 118406 9350416 ~ 9350667 (+)
G41242 NA non-coding downstream 122508 9354518 ~ 9354794 (+)
LOC103022991 NA other upstream 270835 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 443529 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 682008 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1379407 7826523 ~ 7826914 (+)
G40756 NA other upstream 2672647 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 763699 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2339216 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2437437 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2521877 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 3102334 12334344 ~ 12340913 (+)

Expression


Co-expression Network