G41240


Basic Information

Item Value
gene id G41240
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9337848 ~ 9338218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55516
ttttatgttattatttttttcaagaattcAAAGGGCCGTATTGTACACCCTGGGCAAGTCGCGTCGTggtgctcgttgctatcttacaccctgtcaacagtcttgCGCACATGTCATTAAAATAGCTTCAGAATTTAGGAATATATACACTGGTgtgcatggtggtctggaagtgaggtgtgttcaggtaaatatcttggaggtggaaaacacaggagttccactgactgattataaccctgacaacagtcaacaaaaTACCACATATCACACGCAACACTTCTAGACCACAGGAAAAACAAACACCTCGCCCAGAGCCTTCAGGAACCAAaagtaaaatatcaaaaatgtgcacagtaaatattaattac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55516 True 371 lncRNA 0.40 1 9337848 9338218

Neighbor

gene id symbol gene type direction distance location
ect2 ect2,LOC107674529,LOC107718889 coding upstream 81951 9194185 ~ 9255897 (+)
LOC103043643 LOC108439422,LOC108270998,LOC106584308,LOC106613920,LOC105011705 coding upstream 150721 9129858 ~ 9187127 (+)
mcf2l2 LOC108439422,LOC108270998 coding upstream 233003 8998150 ~ 9104845 (+)
LOC103025921 phka2,LOC108439424,LOC107677496,LOC107715813,LOC107718215 coding upstream 351262 8942842 ~ 8986586 (+)
LOC103026226 LOC108439428 coding upstream 418104 8828088 ~ 8919744 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding downstream 87951 9426169 ~ 9713508 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding downstream 607974 9946192 ~ 9953281 (+)
LOC103039038 NA coding downstream 621239 9959457 ~ 9968160 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding downstream 630193 9968411 ~ 9970748 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding downstream 635335 9973553 ~ 9979584 (+)
G41235 NA non-coding upstream 34933 9302625 ~ 9302915 (+)
G41137 NA non-coding upstream 57287 9251517 ~ 9280561 (+)
G41136 NA non-coding upstream 105838 9206321 ~ 9232010 (+)
G41131 NA non-coding upstream 169114 9165009 ~ 9168734 (+)
G41127 NA non-coding upstream 174096 9131109 ~ 9163752 (+)
G41241 NA non-coding downstream 12198 9350416 ~ 9350667 (+)
G41242 NA non-coding downstream 16300 9354518 ~ 9354794 (+)
G41262 NA non-coding downstream 264740 9602958 ~ 9603564 (+)
G41265 NA non-coding downstream 278662 9616880 ~ 9619553 (+)
G41310 NA non-coding downstream 398085 9736303 ~ 9736830 (+)
LOC103022991 NA other upstream 402362 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 575056 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 813535 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 1510934 7826523 ~ 7826914 (+)
G40756 NA other upstream 2804174 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 657491 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 2233008 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 2331229 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 2415669 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2996126 12334344 ~ 12340913 (+)

Expression


Co-expression Network