G45392


Basic Information

Item Value
gene id G45392
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8159245 ~ 8159467 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU51601
TGACAGAATTTTCTTTTTTTTTAAAATAAACACAATGAAAATATAACATGACCGTAATTAGTTAGGCTATCTTGGTTAACATTTCAGTGCATCTGATTAATCAGAGCATTTAATTAGATCATCCTAGTTAACATTTAATCTATTGATAATACATCTAATAAGCACTTTATTTGAGAAATAGTTACCTAGACAGTTGCTGTTTTTTAACTATTCTAACAAGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51601 True 223 lncRNA 0.33 1 8159245 8159467

Neighbor

gene id symbol gene type direction distance location
CI01000006_08108713_08122179 NA coding upstream 36881 8108563 ~ 8122364 (+)
CI01000006_08025159_08032131 NA coding upstream 126622 8025159 ~ 8032623 (+)
CI01000006_07939608_07940846 RXFP3 coding upstream 217830 7939318 ~ 7941415 (+)
CI01000006_07757777_07795187 NNT.L, NNT coding upstream 363987 7757526 ~ 7795258 (+)
CI01000006_07699736_07726659 MFHAS1 coding upstream 432248 7699736 ~ 7726997 (+)
CI01000006_08184916_08188512 NEFMA coding downstream 25332 8184799 ~ 8189299 (+)
CI01000006_08198328_08199463 NA coding downstream 38730 8197881 ~ 8200145 (+)
CI01000006_08222787_08225568 MED15 coding downstream 63320 8222787 ~ 8225568 (+)
CI01000006_08305571_08341681 NA coding downstream 146104 8305571 ~ 8341681 (+)
CI01000006_08366730_08400944 NA coding downstream 206623 8366090 ~ 8402325 (+)
G45391 NA non-coding upstream 352 8158636 ~ 8158893 (+)
G45356 NA non-coding upstream 1710 8154796 ~ 8157535 (+)
G45381 NA non-coding upstream 13165 8133207 ~ 8146080 (+)
G45346 NA non-coding upstream 90001 8069032 ~ 8069244 (+)
G45313 NA non-coding upstream 150966 8007722 ~ 8008279 (+)
G45359 NA non-coding downstream 75271 8234738 ~ 8238406 (+)
G45438 NA non-coding downstream 173112 8332579 ~ 8333478 (+)
G45528 NA non-coding downstream 413227 8572694 ~ 8574744 (+)
G45543 NA non-coding downstream 523514 8682981 ~ 8739598 (+)
G45630 NA non-coding downstream 545866 8705333 ~ 8705667 (+)
G45336 NA other upstream 137294 8019342 ~ 8021951 (+)
G45265 NA other upstream 238890 7883867 ~ 7920355 (+)
G45178 NA other upstream 475574 7607604 ~ 7683671 (+)
G44872 NA other upstream 771361 7356352 ~ 7387884 (+)
CI01000006_07167131_07168925 NA other upstream 988711 7166778 ~ 7168925 (+)
G45355 NA other downstream 50088 8209555 ~ 8212388 (+)
G45416 NA other downstream 659347 8818814 ~ 8834697 (+)
G46652 NA other downstream 1997112 10156579 ~ 10159251 (+)
G47145 NA other downstream 2325891 10485358 ~ 10511806 (+)

Expression


Co-expression Network