G41436


Basic Information

Item Value
gene id G41436
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9989714 ~ 9993222 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55722
GACTTTTCTCTTGACAGCTAGCTTTACATTCATATGCAGGCCTCTGTCTGGACTGAGCATTTGAGTATCCTGCACTGAATAGTAATCATCAGAAGGTGTCTCGTCTACTTCCAGTCTGTTTGGAGCTGTAGAAGGTCTGATGTGTCTGGGAGCCACTGAGTGCTTTATGTAGGAGTCATAAGGCCTATTTACACCATAGCGGTGGCTATCGGCCTGAAAAGCTGGGGCCAAAACCAATCTCTCCTGATCTGCTTCACCTCTGTGAGGATAAATATAGCTGTAGTTGGAAGCATCTCTGTGTACTTGGACTTTCTCTTTAGTGATCACCGGTGGACTCTTGCCTACAGTACTGTGAGACTGGGGAGAACTCCACTCAGCTGAAGTCTGGCTCTTTGACTTCTCATTAAAAATCAGCAAGTCAAGGTCTCGTTTAAATTCACGCAGTCTCTGTTTGTTTACGTTTGTGTAGCCGAGCGCTGCTAACTGCTGCTCAATCTCTTCCTCTGAGAAGTCCAGGTTTTCCATCACTGTCACCTAAAATAAGACAGAGGCTAACCCTGTTCCTTCGCAGCGCCGCCGAGAACAACaaacaagcagcagcagcagctgggcggttacagc

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55722 True 621 lncRNA 0.48 5 9989714 9993222

Neighbor

gene id symbol gene type direction distance location
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 10130 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 18966 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 21554 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 36433 9946192 ~ 9953281 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding upstream 276206 9426169 ~ 9713508 (+)
lgsn NA coding downstream 36435 10029657 ~ 10035243 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 288286 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 299115 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 725518 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 740072 10733294 ~ 10743346 (+)
G41410 NA non-coding upstream 108424 9881055 ~ 9881290 (+)
G41401 NA non-coding upstream 114437 9875060 ~ 9875277 (+)
G41334 NA non-coding upstream 217943 9771540 ~ 9771771 (+)
G41328 NA non-coding upstream 226847 9762466 ~ 9762867 (+)
G41310 NA non-coding upstream 252884 9736303 ~ 9736830 (+)
G41465 NA non-coding downstream 90768 10083990 ~ 10088084 (+)
G41477 NA non-coding downstream 135330 10128552 ~ 10130745 (+)
G41507 NA non-coding downstream 225130 10218352 ~ 10226963 (+)
G41511 LOC108438683,LOC108270806 non-coding downstream 235629 10228851 ~ 10231948 (+)
LOC107197699 NA non-coding downstream 310516 10303738 ~ 10329108 (+)
LOC103022991 NA other upstream 1054228 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1226922 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1465401 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2162800 7826523 ~ 7826914 (+)
G40756 NA other upstream 3456040 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 2487 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 1578004 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1676225 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1760665 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2341122 12334344 ~ 12340913 (+)

Expression


Co-expression Network